PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30627.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 545aa    MW: 62114.9 Da    PI: 6.4666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30627.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.2e-063644011355
                 HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 R+r N++f+ Lr+++P+ +       ++K +iL  +++Y+++L+
  KFK30627.1 364 RRRENEKFSVLRTMVPTvN------EVDKESILNNTIKYLQELE 401
                 6777*************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-5024217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.166351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-7356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-9364415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-5364405No hitNo description
Gene3DG3DSA:4.10.280.105.4E-9366412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSLTMDDSVE VGRGGRSKAQ NSLLRKQLAL AVRSVQWSYA IFWSSSPTQS GVLEWGEGSY  60
NGDIKKRKKI YEAHCKYGLQ RSKQLRKLYL CMLEGDTSST THHDDYDDGD DDGGRNSTTM  120
MLSPDDLSDE EWYYLVSMSY VFSPSQCLPG RALATGETIW LCNAQYAETK LFSRSLLARS  180
ASIQTVVCFP LLGGVIELGV TELISEDPNV LQHIKSCLLE TSKPDCSLNH FSVHQDNDEE  240
KNQMRIKTSE GNSMLEENHE ILLGLSDEDL HYKRTITTVL KHAANRSRRN DKNIHHRRPN  300
VDSGSSFFRW KRHEQPKSNV LQPPSQNVLR KILHDVPLMH STDTKRMFPS QRFGLNQDDP  360
NSDRRRENEK FSVLRTMVPT VNEVDKESIL NNTIKYLQEL EARVEELESC MGSVNFTERQ  420
KMTTKNLNDS VLIEETSGNY DDSTKIDGNS GETEQVFRDQ THLSVKLEET EVVIEVRCSY  480
RDYIVADIME TLSNLHMDAF SVRSHTLNGF LTLNLKAKFR GAAVASVGMI KRELRRVIGE  540
CMRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-12242189192Transcription factor MYC3
4rqw_B1e-12242189192Transcription factor MYC3
4rs9_A1e-12242189192Transcription factor MYC3
4yz6_A1e-12242189192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30627.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBankAF2516970.0AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010505.10.0transcription factor MYC1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A087GL750.0A0A087GL75_ARAAL; Uncharacterized protein
STRINGA0A087GL760.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein