PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK30604.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24112.2 Da PI: 7.4741 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.6 | 2e-38 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++ap+f +eq +++f +vhk+FGasnv+kll+ +pe++r+da+ ++++eA+ r+rdPvyG+v++i +lqqq+ +l++el++l+ KFK30604.1 18 PCGACKFLRRKCVSGCIFAPHFDSEQgAAHFSAVHKVFGASNVSKLLNIVPEHKRPDAVVCICFEAHSRLRDPVYGCVSHIVSLQQQVLSLQSELSYLQ 116 7***********************9989********************************************************************999 PP DUF260 99 ee 100 ++ KFK30604.1 117 AH 118 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.904 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-37 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MSSGVNPSSS GGGGGSGPCG ACKFLRRKCV SGCIFAPHFD SEQGAAHFSA VHKVFGASNV 60 SKLLNIVPEH KRPDAVVCIC FEAHSRLRDP VYGCVSHIVS LQQQVLSLQS ELSYLQAHLA 120 TLELPQPPPA PATSSCSPPP FSISDLPTIT TSSVYDLSSI FEPMSSTWAM QQQQPRPLDQ 180 YYGVPSSSNI GGGGEFQALA REFIHGGQMP TQPPPGTSGS ASRVIKRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 14 | 119 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 14 | 119 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK30604.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396221.1 | 1e-116 | LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 1e-112 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A087GL52 | 1e-165 | A0A087GL52_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GL52 | 1e-165 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 7e-83 | LBD family protein |
Publications ? help Back to Top | |||
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