PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30585.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 394aa    MW: 43129.1 Da    PI: 8.3812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30585.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.6e-16214259555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  KFK30585.1 214 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 259
                 9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.3E-17207269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18207269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13214259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-17214263No hitNo description
SMARTSM003537.4E-18215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSQRVPNCHV DDVPVATVVS TTAADIHPML DYEVAELTWE NGQLALHGLG PPRVPAPSKY  60
SAGAGGTLES IVDQATRLPH PKRKATDELV PWFHHRSSTT MDALVPCFNL PEPARVGSTR  120
VGSCSDGRSM VGGKRGRVAA EWSASGSQRL TMDTCGFTAT SLDENSSSSG KPCTKTTTLF  180
DDHDYVSHSR PQMEEETGGK SSVLTKRSRA AAIHNQSERK RRDKINQRMK TLQKLVPNSS  240
KTDKASMLDE VIEYLKQLQA QVSMMGRMNM PSMMLPMAMQ QQQQQQQLQL SLMSNPMGLG  300
IGMGMPGLLD LNSMNRTAPN LHANMMPNPF VPMPPPPSWD ASSSNETRFH SPLMPDPMAA  360
FLACSSQPAT IEAYSRMAAM YQQMQQQVPS SNPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERKRRD
2218223RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30585.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172291e-148AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259711e-148BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396203.10.0transcription factor UNE10
SwissprotQ8GZ381e-173UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A087GL330.0A0A087GL33_ARAAL; Uncharacterized protein
STRINGA0A087GL330.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-142bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]