PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30584.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 387aa    MW: 42337.2 Da    PI: 8.1508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30584.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.4e-16207252555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  KFK30584.1 207 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 252
                 9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.815202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-18205270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-17207256No hitNo description
PfamPF000102.5E-13207252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17207260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-18208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSQRVPNCHV DDVPVATVVS TTAADIHPML DYEVAELTWE NGQLALHGLG PPRVPAPSKY  60
SAGAGGTLES IVDQATRLPH PKRKATDELV PWFHHRSSTT MDALVPCFNL PEPARVGSTR  120
VGSCSDGRSM VGGKRGRVAA EWSASGSQRL TMDTCGFTAT SLDENSSSSG KPCTKTTTLF  180
DDHDYMEEET GGKSSVLTKR SRAAAIHNQS ERKRRDKINQ RMKTLQKLVP NSSKTDKASM  240
LDEVIEYLKQ LQAQVSMMGR MNMPSMMLPM AMQQQQQQQQ LQLSLMSNPM GLGIGMGMPG  300
LLDLNSMNRT APNLHANMMP NPFVPMPPPP SWDASSSNET RFHSPLMPDP MAAFLACSSQ  360
PATIEAYSRM AAMYQQMQQQ VPSSNPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215ERKRRD
2211216RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30584.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172291e-148AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259711e-148BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396203.10.0transcription factor UNE10
SwissprotQ8GZ381e-165UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A087GL320.0A0A087GL32_ARAAL; Uncharacterized protein
STRINGA0A087GL330.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]