PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30578.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 390aa    MW: 45049.2 Da    PI: 9.6252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30578.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.8e-1723971294
                HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                 ++ l++p  f++++  g  k+e++t++l++  s ++Wevk+  ++++    lt+GWk+F+ + +L++gD+v+Fk++g++ f  +v
  KFK30578.1 23 DTH-LTIPIAFFSKYivG--KHEQTTVKLRSdASDKTWEVKM--DGRR----LTGGWKDFATSLDLRVGDIVIFKHEGDMVF--NV 97
                555.9**********743..456679***997899*******..9998....************************999988..54 PP
2B361.51.4e-19156248598
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ ++l+++ l+lp k a++  ++     ++++ +++g+sW+++l++r  +++y++++GW++F+++n+ ++gD + F+l+g+ + ++++ ++ 
  KFK30578.1 156 QVTDSNLQHDTLYLPAKAARSSVLNRGF-HEMIIVNKEGKSWTLTLKVREPDRTYYIRGGWRSFCHDNRQRVGDLIPFHLVGDGKSTPMICICP 248
                 56889999**************888655.59999*************9999999*****************************9999****997 PP
3B335.81.4e-11285382198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkv 96 
                 f+++ ++ ++ k++ l+lp +f++ +g+ k+   +++l++++g ++  v+l     ++gr  l+kGWk F+++n++   g  +v++l++ + +++ +k+
  KFK30578.1 285 FVTIILTRYNIKNSKLILPITFVKINGIHKQ--EKIILMNKDGvKKRLVNLVQdGPRQGRRGLGKGWKIFCEDNHVYkIGVPFVLELIW-EHKTPILKF 380
                 7888999****************77776644..48********8888888876533444477*************9659**********.677789888 PP

                 E- CS
          B3  97 fr 98 
                 ++
  KFK30578.1 381 CS 382
                 86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-208105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-228105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.22411103IPR003340B3 DNA binding domain
CDDcd100171.89E-1512100No hitNo description
SMARTSM010191.7E-2214103IPR003340B3 DNA binding domain
PfamPF023626.9E-112595IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-18151243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-17152241IPR015300DNA-binding pseudobarrel domain
CDDcd100179.09E-19152248No hitNo description
PROSITE profilePS5086313.747152250IPR003340B3 DNA binding domain
SMARTSM010193.0E-22153250IPR003340B3 DNA binding domain
PfamPF023624.3E-18155248IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-15277381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-13279381IPR015300DNA-binding pseudobarrel domain
CDDcd100174.8E-8284382No hitNo description
PfamPF023629.8E-11285382IPR003340B3 DNA binding domain
PROSITE profilePS508638.078285386IPR003340B3 DNA binding domain
SMARTSM010193.8E-19285384IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MANPPLESPT NPHFFQPLLP GFDTHLTIPI AFFSKYIVGK HEQTTVKLRS DASDKTWEVK  60
MDGRRLTGGW KDFATSLDLR VGDIVIFKHE GDMVFNVTPF GPSFCEIQYT QSHIIKEEED  120
DTVDVEEDRN VLRKKNRKRK TEPGSCLYLD YCFVAQVTDS NLQHDTLYLP AKAARSSVLN  180
RGFHEMIIVN KEGKSWTLTL KVREPDRTYY IRGGWRSFCH DNRQRVGDLI PFHLVGDGKS  240
TPMICICPEE KCSELISEYI SKMKTEKKEK RRCWVASSSS RQNRFVTIIL TRYNIKNSKL  300
ILPITFVKIN GIHKQEKIIL MNKDGVKKRL VNLVQDGPRQ GRRGLGKGWK IFCEDNHVYK  360
IGVPFVLELI WEHKTPILKF CSIKTQPICV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30578.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004600.10.0B3 domain-containing protein REM7
TrEMBLA0A087GL260.0A0A087GL26_ARAAL; Uncharacterized protein
STRINGA0A087GL260.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-85B3 family protein