PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30520.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 293aa    MW: 33357.7 Da    PI: 8.1854
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30520.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32212270159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  KFK30520.1 212 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCKVKKRVERLADDPRMVITTYEGRHLHS 270
                 59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33197270IPR003657WRKY domain
SuperFamilySSF1182902.88E-28205271IPR003657WRKY domain
PROSITE profilePS5081129.333207272IPR003657WRKY domain
SMARTSM007747.5E-37212271IPR003657WRKY domain
PfamPF031063.1E-25213269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGTINQGISL FDEPQNIINP NNTNHLGFFF SFPNHTLSSS SSSSSSSPSS LVSPFHSLNS  60
FLHNNNNRFV THPQDPINFM TNLPETLISS LSSSKQRDDD HDGIVNLDHH RLTSAISSQR  120
PSSNPWVWSS QAGYGYSKKT NHERSVIDVD DTDDDGGDGI NDDDHHDTPP RHKHNTASLG  180
VVSTLKMKKL KTKRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ  240
DKCKVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDEDSL SSSHHSPLSN FFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25204269974Probable WRKY transcription factor 4
2lex_A3e-25204269974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195651.11e-150WRKY DNA-binding protein 13
SwissprotQ9SVB71e-151WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A087GKW80.0A0A087GKW8_ARAAL; Uncharacterized protein
STRINGA0A087GKW80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-110WRKY DNA-binding protein 13