PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK30428.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

FAR1

Protein Properties

Length: 733aa MW: 84107.3 Da PI: 6.7165

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK30428.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.9	5.4e-31	78	169	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ + ++HnHel+p KFK30428.1 78 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFLKDHNHELVP 169 9*************************************999888555667889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-29	78	169	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-32	290	382	IPR018289	MULE transposase domain
Pfam	PF04434	2.2E-12	558	604	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.029	574	606	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-8	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MDNEVLDFDI GVGVSSGGDV DDDAIDIEHH VIDDDDMLDS PMPVANSDAV NYFPEGDLLD 60 LEPYDGLEFE SEEAAKAFYN SYARRIGFST RVSSSRRSRR DGAIIQRQFV CAKEGFRNMN 120 EKRTKDREIK RPRTITRVGC KASLSVKMQD SGKWVVSGFL KDHNHELVPP DQVHCLRSHR 180 QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN NRQKSIEGEI 240 QLLLDYLRQM NADNPNFYYA VQGSEDHSVG NVFWADPKAR ADFTYFGDTV TFDTTYRSNR 300 YRLPFAPFTG VNHHGQPILF GCAFIINETE ASFAWLFNAW LAAMSAHPPV SITTDHDEVI 360 RAAIMQVFPG ARHRFCKWHI FKKCQDKLSH VFLQHPSFES DFHKSVNLTE SVEDFESCWF 420 SLLDKYELRD HEWLQAVYSD RRQWVPVYLR DTFFAEMSLT QRSDSMNSYF DGYINASTNL 480 SQFFKLYEKA LESRLEKEVK ADYDTMNSPP VLKTPSPMEK QASELYTRKL FVRFQEELVG 540 TLTFMASKAD DDGDLVTYQV AKYGEAHKAH FVKFNVLVMR ANCSCQMFEF SGIICRHILA 600 VFRVTNLLTL PPYYILKRWT RNAKSSVIFD DYGLHAYANY LESHTVRYNT LRHKAFNFVQ 660 EAGKSLYTCD VAVVALQEAA KTVSLAMKNE VRRTVANGHV KEMCYNEDCQ QQVPQPEPKV 720 RILFFAILVA LIK

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MDNEVLDFDI GVGVSSGGDV DDDAIDIEHH VIDDDDMLDS PMPVANSDAV NYFPEGDLLD  60
LEPYDGLEFE SEEAAKAFYN SYARRIGFST RVSSSRRSRR DGAIIQRQFV CAKEGFRNMN  120
EKRTKDREIK RPRTITRVGC KASLSVKMQD SGKWVVSGFL KDHNHELVPP DQVHCLRSHR  180
QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN NRQKSIEGEI  240
QLLLDYLRQM NADNPNFYYA VQGSEDHSVG NVFWADPKAR ADFTYFGDTV TFDTTYRSNR  300
YRLPFAPFTG VNHHGQPILF GCAFIINETE ASFAWLFNAW LAAMSAHPPV SITTDHDEVI  360
RAAIMQVFPG ARHRFCKWHI FKKCQDKLSH VFLQHPSFES DFHKSVNLTE SVEDFESCWF  420
SLLDKYELRD HEWLQAVYSD RRQWVPVYLR DTFFAEMSLT QRSDSMNSYF DGYINASTNL  480
SQFFKLYEKA LESRLEKEVK ADYDTMNSPP VLKTPSPMEK QASELYTRKL FVRFQEELVG  540
TLTFMASKAD DDGDLVTYQV AKYGEAHKAH FVKFNVLVMR ANCSCQMFEF SGIICRHILA  600
VFRVTNLLTL PPYYILKRWT RNAKSSVIFD DYGLHAYANY LESHTVRYNT LRHKAFNFVQ  660
EAGKSLYTCD VAVVALQEAA KTVSLAMKNE VRRTVANGHV KEMCYNEDCQ QQVPQPEPKV  720
RILFFAILVA LIK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK30428.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411599.2	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A087GKM6	0.0	A0A087GKM6_ARAAL; Uncharacterized protein
STRING	A0A087GKM6	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]