PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30351.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 309aa    MW: 33677.4 Da    PI: 6.2641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30351.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53e-181358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll  +v ++G+++W++I++ +  gR++k+c++rw + 
       KFK30351.1 13 KGPWSPEEDDLLQSLVSKHGPRNWSLISKSIS-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding54.72.4e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++teEde +++a++++G++ W+tI+r ++ gRt++ +k++w++ 
       KFK30351.1  67 AFSTEEDETIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 109
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.939863IPR017930Myb domain
SuperFamilySSF466891.16E-3010106IPR009057Homeodomain-like
SMARTSM007177.1E-161261IPR001005SANT/Myb domain
PfamPF002494.9E-181358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-251466IPR009057Homeodomain-like
CDDcd001679.77E-151557No hitNo description
SMARTSM007177.5E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129419.74165114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2167113IPR009057Homeodomain-like
CDDcd001677.92E-1167110No hitNo description
PfamPF002491.6E-1467109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSGLNRKNME RIKGPWSPEE DDLLQSLVSK HGPRNWSLIS KSISGRSGKS CRLRWCNQLS  60
PEVEHRAFST EEDETIIRAH ARFGNKWATI SRLLNGRTDN AIKNHWNSTL KRKCSSNGSQ  120
GQSCDFICNG GYDGNLGDEQ PLKRTASGGG GVGVGVSTGL YMSPGSPSGS DVSEQSSGGG  180
LHVFKPTVVT SEDPPTYLSL SLPWSETETV RVNESTEVNR ETVNEGGYTA ELFPVRKEEE  240
EVVEEGRGIS GGFGGEFMTV VQEMIRTEVR SYMAELHGGG GSCVPQSVNS RRVGFREFIV  300
NQIGIGKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39101141105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30351.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595822.11e-175PREDICTED: transcription factor MYB44
SwissprotO231601e-174MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A087GKE90.0A0A087GKE9_ARAAL; Uncharacterized protein
STRINGA0A087GKE90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-152myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]