PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30278.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 306aa    MW: 35085.3 Da    PI: 6.7939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30278.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08154200555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++sLq
  KFK30278.1 154 HSLAERARREKISKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 200
                 999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.44E-7147204No hitNo description
SuperFamilySSF474593.01E-16147218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-17151217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6154200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDLVVLDRLK WLQQQQQQQM VSPEFLQILG SDGREELKRV ETYLGNINEQ SFRHYPEFGP  60
DYDTIDGCIS RTSSFQMEPV KKNNEENRTI ALQNKRKPEV KSEKRDKKKI KAEDEIESSM  120
KGKSNISNID TSSGTEKQDY IHVRARRGEA TDRHSLAERA RREKISKKMK CLQDIVPGCN  180
KVTGKAGMLD EIINYVQSLQ QQVEFLSMKL SVINPELEFH IDELSAKQAY FTNLPEPETD  240
SKQSVMADLR SFPLHQQGSL DYSVMNSNQN TSLGAKDQSS SSWETHSQCL YNSLRTDSAS  300
NFFSLK
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30278.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437338.10.0PREDICTED: transcription factor BEE 2 isoform X4
RefseqXP_019089806.10.0PREDICTED: transcription factor BEE 2 isoform X2
SwissprotQ93VJ40.0BEE2_ARATH; Transcription factor BEE 2
TrEMBLA0A087GK760.0A0A087GK76_ARAAL; Uncharacterized protein
STRINGA0A087GK750.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.21e-173BR enhanced expression 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]