PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 280aa    MW: 31439.6 Da    PI: 9.1718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30238.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-075297554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +  rE+ RRd++N+ f eL   l ++     +K +K +iL  +++ +k+L
  KFK30238.1 52 KADREKIRRDKLNEQFLELGNALDPN----RPKSDKTSILNDTIQILKDL 97
                678********************997....79*************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.4174797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1348118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-54897No hitNo description
PfamPF000102.6E-55297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-653103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1155118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDQSKKPKIC SESDYVLDSS ASSSSSGHNL RHEMVMEVKK EPVASTCRKI LKADREKIRR  60
DKLNEQFLEL GNALDPNRPK SDKTSILNDT IQILKDLMSQ VDRLKAEYVT LSKESYELMQ  120
EKRELREEKV TLKSDIEILN GQYQDRVRKT MVPWIPHYTY PLPVVAITQA PIAVPPQLQP  180
FPFYGTQDTK PCSTIIHHSS SSSGASNKQD SKSKSLDLNL MRKSNHTYNK DDVGLELELK  240
IYASSSAQKD EKKGGSSKTI ASSSNYSSSQ ADSKIVPSVP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005285.11e-101transcription factor bHLH11
SwissprotQ8W2F22e-91BH011_ARATH; Transcription factor bHLH11
TrEMBLA0A087GK360.0A0A087GK36_ARAAL; Uncharacterized protein
STRINGA0A087GK360.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.17e-82bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  5. Tanabe N, et al.
    The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana.
    J. Plant Res., 2019. 132(1): p. 93-105
    [PMID:30417276]