PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK30238.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 280aa MW: 31439.6 Da PI: 9.1718

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK30238.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.8	1.7e-07	52	97	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N+ f eL l ++ +K +K +iL +++ +k+L KFK30238.1 52 KADREKIRRDKLNEQFLELGNALDPN----RPKSDKTSILNDTIQILKDL 97 678******************997....79***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.417	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-13	48	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.03E-5	48	97	No hit	No description
Pfam	PF00010	2.6E-5	52	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-6	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-11	55	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDQSKKPKIC SESDYVLDSS ASSSSSGHNL RHEMVMEVKK EPVASTCRKI LKADREKIRR 60 DKLNEQFLEL GNALDPNRPK SDKTSILNDT IQILKDLMSQ VDRLKAEYVT LSKESYELMQ 120 EKRELREEKV TLKSDIEILN GQYQDRVRKT MVPWIPHYTY PLPVVAITQA PIAVPPQLQP 180 FPFYGTQDTK PCSTIIHHSS SSSGASNKQD SKSKSLDLNL MRKSNHTYNK DDVGLELELK 240 IYASSSAQKD EKKGGSSKTI ASSSNYSSSQ ADSKIVPSVP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK30238.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024005285.1	1e-101	transcription factor bHLH11
Swissprot	Q8W2F2	2e-91	BH011_ARATH; Transcription factor bHLH11
TrEMBL	A0A087GK36	0.0	A0A087GK36_ARAAL; Uncharacterized protein
STRING	A0A087GK36	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.1	7e-82	bHLH family protein

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]