PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30192.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WOX
Protein Properties Length: 264aa    MW: 29427.6 Da    PI: 5.173
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30192.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.11.9e-2091151257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 r+R+t+t+ ql++Le+ F + + +ps++++++++++l    ++ e++V++WFqNrRa+ k+
  KFK30192.1  91 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELtqhgQIAEQNVYNWFQNRRARSKR 151
                 89*****************99**************************************97 PP
2Wus_type_Homeobox102.52.9e-3390153265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i ++NV++WFQNr+aR+++kq
         KFK30192.1  90 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELTQHGQIAEQNVYNWFQNRRARSKRKQ 153
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1686154IPR009057Homeodomain-like
SuperFamilySSF466899.41E-1787153IPR009057Homeodomain-like
PROSITE profilePS5007114.75487152IPR001356Homeobox domain
SMARTSM003891.9E-1289156IPR001356Homeobox domain
PfamPF000463.0E-1891151IPR001356Homeobox domain
CDDcd000861.04E-1291153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MMEWDNQQQP NNNSNLHVID VNGGGGMYVK VMTDEQYETL RKQIAIYATI CERLVEMHKT  60
LTAQQDLAGG RLGGLYADPL MSSIGNKMSA RQRWTPTPVQ LQILERIFDQ GTGTPSKQKI  120
KDITEELTQH GQIAEQNVYN WFQNRRARSK RKQHCGGGGG GSSSNNNGES EVETEIESLN  180
DKRKRQPESL LVLPDGNNNN NAIGTSSTSP RPEDLCFQSP EMSSDLHLLG VLSNPRDDEH  240
LVGKMGLSDS YNLYDHVEDY GMSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30192.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432267.11e-151PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817881e-148WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A087GJZ00.0A0A087GJZ0_ARAAL; Uncharacterized protein
STRINGA0A087GJZ00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-150WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]