PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29899.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GATA
Protein Properties Length: 332aa    MW: 36874.6 Da    PI: 5.2719
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29899.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18229263135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  KFK29899.1 229 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 263
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.6E-891312IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.374223259IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-18223273IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.0E-15224261IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.7E-16224287No hitNo description
CDDcd002027.97E-15228275No hitNo description
PfamPF003201.2E-15229263IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEQQQLTSEL FVVDDLLDFS NHESQPDDGF DSFPDSSTVS SAANLSGDSS NSSSLYTDGD  60
GTGFSDDLCV PCEDLAELEW LSNFVEESFS KEDQEKLHLL SGLKKPHQTT GLISKEDQEK  120
LHLLSGLKEP HQTTGLIQTH QIKSEPELDQ IYISTDGDED DDGDDSNVAF PAKARSKRSR  180
SAASTWASRL LAIAGSDETG PGPKKKQQRI KEHEIAGEID GDGGEGRRCL HCATDKTPQW  240
RTGPMGPKTL CNACGVRYKS GRLVPEYRPA SSPTFVMARH SNSHRKVMEL RRQKEIRDEN  300
LMSQLLRSNG GDYLIHNHHN SSHVAREFRH LI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29899.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596132.11e-150PREDICTED: GATA transcription factor 9-like
SwissprotO826321e-138GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A087GJ470.0A0A087GJ47_ARAAL; GATA transcription factor
STRINGA0A087GJ470.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-101GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]