PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29768.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 387aa    MW: 44697.6 Da    PI: 9.344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29768.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23.1e-1825991496
                T-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3 14 grlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                + l +p  f++++  g  k+e++t++l++  s ++Wevk+  ++++    lt+GWk+Fv +++L++gD+v+Fk++g++ f  +v+ 
  KFK29768.1 25 H-LKIPVAFFSKYivG--KHEQTTVKLRSdASDKTWEVKM--EGRR----LTNGWKDFVTSHDLRVGDIVIFKHEGDMVF--HVTP 99
                4.99*********743..456679***997899*******..8888....***********************9999998..7765 PP
2B358.89.7e-19157249598
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ ++l+++ + lp k  +++ ++  + +++++ +++g+sW+++l+ +  +++y++++GW++F+++n+ ++gD + F l+g+ ++++++ ++ 
  KFK29768.1 157 QVTDSNLQHDTFHLPAKASRSNVLNR-GFQEMIIVNKEGKSWTLTLKGKEADQTYYISRGWRSFCHENRQRVGDLIPFNLVGDGKTTPMICICP 249
                 56889999**************8885.5569***************99999999*****************************9999****997 PP
3B337.63.9e-12283379198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvf 97 
                 f+++ ++ ++ k + l+lp +f++ hg+ k+e  +++l++++gr+  v+l     + gr  l+kGWk F+++n+++  g  +v++l++ +   +v+k++
  KFK29768.1 283 FVTIILTRYNIKYSKLILPTSFVKIHGLHKQE--KVILMNKDGRKRLVNLVQdGPRFGRRGLGKGWKIFCEDNDVNkIGVPFVLELIW-EHNIPVLKFC 378
                 77888999***************999999655..8***************66533334467**************879999****999.5555787777 PP

                 - CS
          B3  98 r 98 
                 +
  KFK29768.1 379 S 379
                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-248105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-219109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.33811103IPR003340B3 DNA binding domain
CDDcd100171.10E-1612100No hitNo description
SMARTSM010193.3E-2414103IPR003340B3 DNA binding domain
PfamPF023622.1E-122695IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-16152245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-16153244IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.422153251IPR003340B3 DNA binding domain
CDDcd100171.36E-15153249No hitNo description
SMARTSM010191.9E-21154251IPR003340B3 DNA binding domain
PfamPF023623.4E-17156249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18275379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-16277378IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-10282379No hitNo description
SMARTSM010192.9E-19283381IPR003340B3 DNA binding domain
PROSITE profilePS508638.995283381IPR003340B3 DNA binding domain
PfamPF023628.7E-11283379IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MTNPPLQSPT NPHFLQPLLP GFDTHLKIPV AFFSKYIVGK HEQTTVKLRS DASDKTWEVK  60
MEGRRLTNGW KDFVTSHDLR VGDIVIFKHE GDMVFHVTPF GSSCCEIQYT QQSHIIKEEE  120
DDIVHVEEDR NVLRKKNQKP KTEPESFISF DYCFVAQVTD SNLQHDTFHL PAKASRSNVL  180
NRGFQEMIIV NKEGKSWTLT LKGKEADQTY YISRGWRSFC HENRQRVGDL IPFNLVGDGK  240
TTPMICICPE EKCKELISEY ISKMKTVKRS CWVASSSSRQ NRFVTIILTR YNIKYSKLIL  300
PTSFVKIHGL HKQEKVILMN KDGRKRLVNL VQDGPRFGRR GLGKGWKIFC EDNDVNKIGV  360
PFVLELIWEH NIPVLKFCSI KIEPISV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004600.10.0B3 domain-containing protein REM7
TrEMBLA0A087GIR60.0A0A087GIR6_ARAAL; Uncharacterized protein
STRINGA0A087GIR60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-88B3 family protein