PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29682.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 326aa    MW: 34466.5 Da    PI: 7.0053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29682.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11144189555
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  KFK29682.1 144 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 189
                 99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.03E-13137193No hitNo description
SuperFamilySSF474596.28E-17137198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.301139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16141198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-9144189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNSSLLTPSS SSSSPHLQSP ATFDHEDFLH HIFSSTPWSS SVLDDSPPPP PPPSSDSGFH  60
DSRNQITMIP LPNHHHNHPN EALFTGFSAG SLPFHIPQGS GGGLMNQTQS QTATASTTTG  120
GGALAPTQSK PKVRARRGQA TDPHSIAERL RRERIAERMK SLQELVPNGN KTDKASMLDE  180
IIDYVKFLQL QVKVLSMSRL GAAGSVSSQI SEDAGGSHEN NSSSETAAKL TEHQVAKLME  240
EDMGSAMQYL QGKGLCLMPI SLATTISTAT CPSRNPPMIS AVKDTGVPPL SPNLSVQSTN  300
TATTPIVNGN CSSLVTVKDA PSVSKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29682.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937111e-154AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320095.11e-162LJRHL1-like 2
RefseqNP_194827.31e-161LJRHL1-like 2
SwissprotQ8S3D51e-163BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A087GII00.0A0A087GII0_ARAAL; Uncharacterized protein
STRINGA0A087GII00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-120LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]