PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 409aa    MW: 44960 Da    PI: 6.6752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29460.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000542693041555
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++  +++ L +l+ +      +K + a++L +A+ YI+ Lq
  KFK29460.1 269 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 304
                 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-5264308No hitNo description
SuperFamilySSF474596.02E-10264315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-7269311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MMNRGHVLES SPVQQLMAAG NPNWWNVSGG MRPPPPLMGQ QQGTLPPQMT PNNNYLRPRM  60
MPNLLPHYLP SPATSSSSSS SPSLPNNPNL SSWLESNDLP PESWSLSQLL LGGLMMGEEE  120
RLEMMNHHNH HDEQQHSFQG KMRLENWEEQ VLSHQQASMV VIDIKQESNI NNNNGYLISS  180
PNSPPNKSCV TTTTTTSLNS NDDNNNINNN SMLDFSSNHN GLNLSEGRHT PPDRSSECNS  240
LEIGGSTNKK PRLQPSPSSQ STLKVRKEKL GGRIAALHQL VSPFGKTDTA SVLSEAIGYI  300
RFLQSQIEAL SHPYFGTTAS GNMRHQQHLQ GDRSSIFPED PGQLVNDQCM KRRGVSSSST  360
DNQNPNEEPK IKDLKSRGLC LVPISCTLQV GSDNGADYWA PALGSAGFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0813160.0AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438345.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A087GHV80.0A0A087GHV8_ARAAL; Uncharacterized protein
STRINGA0A087GHV80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]