PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK29425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 375aa MW: 40958.5 Da PI: 5.585 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.4 | 4.6e-07 | 262 | 301 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRR+ri++++ L+el+P++ + a +L A eY+ksLq KFK29425.1 262 RRRERIKERMIALQELIPHC-----NASNTALMLDDAAEYMKSLQ 301 9******************8.....357899*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.96E-8 | 249 | 305 | No hit | No description |
PROSITE profile | PS50888 | 11.357 | 251 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-5 | 255 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-12 | 262 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-12 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MIPIYHPKIL FYFSSLNLIN IIIIMGEDEL LWKSGQAEGP TSDPPILRGS GSGGEGEGTA 60 PFPFSPLCHQ SLFFHEPEMA SSSSSWLHHQ SFYPGVAYTP AMQPQGSVSL AQPPPSAPYH 120 PPVENLTGQF FAATRAENLM NVSSLRGNIS GPSIPMVREL TQVGSSSATE YTPVTEGTKT 180 PPTVTGGVLH TFVVPGLGRM EKAVVIETKA ETEPVRIQPA TETESADDKK REETEETEET 240 EEAAGSTPRK KSRATEMHKL SRRRERIKER MIALQELIPH CNASNTALML DDAAEYMKSL 300 QMQIQMMSMG CSLMPATYTS QFMPRMVMGM NRPPSTPFPG TPPFPSQAHM ASLADATTFS 360 IVESNNITAE FHPGK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK29425.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001320083.1 | 3e-82 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9SVU6 | 3e-83 | BH023_ARATH; Transcription factor bHLH23 | ||||
TrEMBL | A0A087GHS3 | 0.0 | A0A087GHS3_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GHS1 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28800.1 | 2e-51 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|