PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29424.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 377aa    MW: 41185.8 Da    PI: 5.7809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29424.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.4e-09256303355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++h+   rrRR+ri++++  L+el+P++        + a +L  A eY+ksLq
  KFK29424.1 256 EMHKLSARRRRERIKERMIALQELIPHC-----NASNTALMLDDAAEYMKSLQ 303
                 5799999********************8.....357899*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-15250319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.916253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14257313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6257303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-9259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MIPIYHPKIL FYFSSLNLIN IIIIMGEDEL LWKSGQAEGP TSDPPILRGS GSGGEGEGTA  60
PFPFSPLCHQ SLFFHEPEMA SSSSSWLHHQ SFYPGVAYTP AMQPQGSVSL AQPPPSAPYH  120
PPVENLTGQF FAATRAENLM NVSSLRGNIS GPSIPMVREL TQVGSSSATE YTPVTEGTKT  180
PPTVTGGVLH TFVVPGLGRM EKAVVIETKA ETEPVRIQPA TETESADDKK REETEETEET  240
EEAAGSTPRK KSRATEMHKL SARRRRERIK ERMIALQELI PHCNASNTAL MLDDAAEYMK  300
SLQMQIQMMS MGCSLMPATY TSQFMPRMVM GMNRPPSTPF PGTPPFPSQA HMASLADATT  360
FSIVESNNIT AEFHPGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248265RKKSRATEMHKLSARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320083.19e-85basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9SVU68e-86BH023_ARATH; Transcription factor bHLH23
TrEMBLA0A087GHS20.0A0A087GHS2_ARAAL; Uncharacterized protein
STRINGA0A087GHS10.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28790.17e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]