PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29422.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 291aa    MW: 32784.9 Da    PI: 6.1511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29422.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16142189355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++hn +ErrRR+riN+++  L+el+P +      K +Ka++L  AveY+ksLq
  KFK29422.1 142 EMHNRAERRRRERINERMKALQELIPRC-----NKSDKASMLDDAVEYMKSLQ 189
                 58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-20137207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.209139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-14142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-20143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-17145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-4153193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MASWFYNRHR EDDFFSHLLY FCNVAASQPQ ISISLAPPPP PTSQVLARGY LITEPGPVLR  60
DSTLVGSSSA NEYSLIPVTE TPPMVRVSPT VVVPGLGRKE KAVVSETEVE TADEDKGNQR  120
EETEKTEEGG AGGSRKRSRA AEMHNRAERR RRERINERMK ALQELIPRCN KSDKASMLDD  180
AVEYMKSLQL QIQMMSMRCS AMQQFIAMGM NRPPFIPFLG TPPFPSYPPP HYPFPNPVWN  240
QPQFPGYMNP YSQFAGLQQQ MQQPPPLQNQ TTAQPSFSQA SSSSWESEDE N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134151RKRSRAAEMHNRAERRRR
2147152ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29422.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412909.22e-75transcription factor bHLH119
SwissprotQ9SVU71e-68BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A087GHS00.0A0A087GHS0_ARAAL; Uncharacterized protein
STRINGA0A087GHS00.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.14e-27bHLH family protein