PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29317.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 304aa    MW: 34653.1 Da    PI: 4.5186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29317.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-18108157255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++ Vr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  KFK29317.1 108 KFRAVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFSTAEEAAIVYDNAAIRLRG 157
                 7899*****.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-28107165IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-20108166IPR016177DNA-binding domain
PfamPF008472.3E-10108157IPR001471AP2/ERF domain
SMARTSM003807.9E-38108171IPR001471AP2/ERF domain
CDDcd000181.20E-32108167No hitNo description
PROSITE profilePS5103222.55108165IPR001471AP2/ERF domain
PRINTSPR003673.9E-9109120IPR001471AP2/ERF domain
PRINTSPR003673.9E-9131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDEYVKYTEH KTVIKNYTKN LSSEKKKTIG SGNSARLVRV CMTDRDATDS SSDDEEEFMF  60
PRRRVKKLIN EIRVEPSSGD VSSPTNDRNR VAVDSSISAS CTSQNQRKFR AVRQRPWGKW  120
AAEIRDPEQR RRIWLGTFST AEEAAIVYDN AAIRLRGPDA LTNFTVHREP ESNLSVSTSE  180
SMDGYSHHQL SPTSVLTYKT NVSEPVESVK QELAEPEPIS WHLGEGNNDN DSFPFDIPFL  240
DNYFNESLPD ISIFDQPMSP IQSFDNNFFS DLMLLDSNNT EENYSSDVKE IGLMFNDLDD  300
SFNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20107164159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29317.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194524.21e-147cytokinin response factor 4
SwissprotQ9SUE31e-148CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A087GHG50.0A0A087GHG5_ARAAL; Uncharacterized protein
STRINGA0A087GHG50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-144cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]