PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK29125.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

HRT-like

Protein Properties

Length: 400aa MW: 45319.6 Da PI: 9.3736

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK29125.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	59.5	5.2e-19	197	227	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l+dG++C+++P++gRKRC eHKG+Ri KFK29125.1 197 VCGVLLQDGTICTTTPIEGRKRCTEHKGQRI 227 7*****************************7 PP
2	HRT-like	48.1	1.9e-15	252	282	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d +C+ +Pv RKRCe HKGmR+ KFK29125.1 252 ICGVILPDMVPCRSKPVSRRKRCEDHKGMRT 282 8*****************************5 PP
3	HRT-like	54.8	1.5e-17	368	398	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l +GsvC ++ vkgRKRCeeHKGmR+ KFK29125.1 368 MCGVKLYNGSVCDKSLVKGRKRCEEHKGMRV 398 6*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MFKRDDYIRT KHDAVFTKWQ GFARSMLLRK PFSETEELRR TFADYSSISG DLGPKILLGA 60 NGREYFRKEK DFLGRYRVQG SLPGLCELGV AVIGHDQGQK ADSDDHLVTE NIRSRIHPYG 120 TRHNLLKKLG ENEFRKTGLS QTILPLTQKK ISNRTEDKQH DLAEGRESSC DPAILRLSRS 180 RPHSGLDRHD DIVDGSVCGV LLQDGTICTT TPIEGRKRCT EHKGQRISSV SVGKHIPCEV 240 PTRRECEENE NICGVILPDM VPCRSKPVSR RKRCEDHKGM RTNAFFFLMN PTERDKAFKE 300 EKSKPDTRTG SMDQENLGPG LSCEATTKSG LPCTRIPPNG CRRCWQHKDK TMDHRSSENI 360 QSTVKQVMCG VKLYNGSVCD KSLVKGRKRC EEHKGMRVTS

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MFKRDDYIRT KHDAVFTKWQ GFARSMLLRK PFSETEELRR TFADYSSISG DLGPKILLGA  60
NGREYFRKEK DFLGRYRVQG SLPGLCELGV AVIGHDQGQK ADSDDHLVTE NIRSRIHPYG  120
TRHNLLKKLG ENEFRKTGLS QTILPLTQKK ISNRTEDKQH DLAEGRESSC DPAILRLSRS  180
RPHSGLDRHD DIVDGSVCGV LLQDGTICTT TPIEGRKRCT EHKGQRISSV SVGKHIPCEV  240
PTRRECEENE NICGVILPDM VPCRSKPVSR RKRCEDHKGM RTNAFFFLMN PTERDKAFKE  300
EKSKPDTRTG SMDQENLGPG LSCEATTKSG LPCTRIPPNG CRRCWQHKDK TMDHRSSENI  360
QSTVKQVMCG VKLYNGSVCD KSLVKGRKRC EEHKGMRVTS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269\|PubMed:16244914}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK29125.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024005800.1	0.0	protein EFFECTOR OF TRANSCRIPTION 1
Swissprot	A2RQG7	1e-160	ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBL	A0A087GGX3	0.0	A0A087GGX3_ARAAL; Uncharacterized protein
STRING	A0A087GGX3	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26170.1	1e-141