PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK29125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HRT-like | ||||||||
Protein Properties | Length: 400aa MW: 45319.6 Da PI: 9.3736 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 59.5 | 5.2e-19 | 197 | 227 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l+dG++C+++P++gRKRC eHKG+Ri KFK29125.1 197 VCGVLLQDGTICTTTPIEGRKRCTEHKGQRI 227 7*****************************7 PP | |||||||
2 | HRT-like | 48.1 | 1.9e-15 | 252 | 282 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d +C+ +Pv RKRCe HKGmR+ KFK29125.1 252 ICGVILPDMVPCRSKPVSRRKRCEDHKGMRT 282 8*****************************5 PP | |||||||
3 | HRT-like | 54.8 | 1.5e-17 | 368 | 398 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l +GsvC ++ vkgRKRCeeHKGmR+ KFK29125.1 368 MCGVKLYNGSVCDKSLVKGRKRCEEHKGMRV 398 6*****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MFKRDDYIRT KHDAVFTKWQ GFARSMLLRK PFSETEELRR TFADYSSISG DLGPKILLGA 60 NGREYFRKEK DFLGRYRVQG SLPGLCELGV AVIGHDQGQK ADSDDHLVTE NIRSRIHPYG 120 TRHNLLKKLG ENEFRKTGLS QTILPLTQKK ISNRTEDKQH DLAEGRESSC DPAILRLSRS 180 RPHSGLDRHD DIVDGSVCGV LLQDGTICTT TPIEGRKRCT EHKGQRISSV SVGKHIPCEV 240 PTRRECEENE NICGVILPDM VPCRSKPVSR RKRCEDHKGM RTNAFFFLMN PTERDKAFKE 300 EKSKPDTRTG SMDQENLGPG LSCEATTKSG LPCTRIPPNG CRRCWQHKDK TMDHRSSENI 360 QSTVKQVMCG VKLYNGSVCD KSLVKGRKRC EEHKGMRVTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269|PubMed:16244914}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK29125.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024005800.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 1 | ||||
Swissprot | A2RQG7 | 1e-160 | ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION | ||||
TrEMBL | A0A087GGX3 | 0.0 | A0A087GGX3_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GGX3 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26170.1 | 1e-141 |