PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28995.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MIKC_MADS
Protein Properties Length: 286aa    MW: 33821.2 Da    PI: 9.3204
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28995.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-291059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rien++nrqvtfskRr+g+lKKA+E+SvLCdaev++i+fs++gkl+eyss
  KFK28995.1 10 RIENTINRQVTFSKRRAGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSS 59
                8***********************************************96 PP

2K-box100.62.2e-331092073100
       K-box   3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +++ k+  +++ + +++ e+++Lk +ie L+++qRh+lGedLes+slkeLq+Leq+L+++lk+iRs+Kn+l++e++++lq+keke+qeen +L k++ e
  KFK28995.1 109 ERQLKDpDHSHVNMNWSMEYSRLKTKIELLEKNQRHYLGEDLESMSLKELQNLEQHLDTALKQIRSRKNQLMYESLNNLQRKEKEIQEENSMLAKQVTE 207
                 566666556666789********************************************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.679161IPR002100Transcription factor, MADS-box
CDDcd002651.56E-352111No hitNo description
SuperFamilySSF554551.57E-28274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-29117205IPR002487Transcription factor, K-box
PROSITE profilePS5129717.198121211IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRGRVQLRR IENTINRQVT FSKRRAGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE  60
SWYRETGNKE VTSKYRDQSL TYGDMQFNPK LNHSMEKVLE RYERYSYAER QLKDPDHSHV  120
NMNWSMEYSR LKTKIELLEK NQRHYLGEDL ESMSLKELQN LEQHLDTALK QIRSRKNQLM  180
YESLNNLQRK EKEIQEENSM LAKQVTEREN ILKTSQQNQW KQQHHSHVKQ PQPQPQLHPY  240
MITHQTSPFL NMGGLYQGED PTAARRNNLD LTLEPIYNCS LGCFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18159159MEF2C
5f28_B5e-18159159MEF2C
5f28_C5e-18159159MEF2C
5f28_D5e-18159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHDBD1e-128L36925.1 Arabidopsis thaliana (clone pSK112) CAL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415910.11e-144transcription factor CAULIFLOWER
SwissprotQ6R4S31e-144CAL_BRARR; Transcription factor CAULIFLOWER
SwissprotQ6R4S61e-144CAL_BRARC; Transcription factor CAULIFLOWER
TrEMBLA0A087GGJ30.0A0A087GGJ3_ARAAL; Uncharacterized protein
STRINGA0A087GGJ30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-136MIKC_MADS family protein