PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK28995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 286aa MW: 33821.2 Da PI: 9.3204 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.4 | 1.1e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvtfskRr+g+lKKA+E+SvLCdaev++i+fs++gkl+eyss KFK28995.1 10 RIENTINRQVTFSKRRAGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 100.6 | 2.2e-33 | 109 | 207 | 3 | 100 |
K-box 3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ k+ +++ + +++ e+++Lk +ie L+++qRh+lGedLes+slkeLq+Leq+L+++lk+iRs+Kn+l++e++++lq+keke+qeen +L k++ e KFK28995.1 109 ERQLKDpDHSHVNMNWSMEYSRLKTKIELLEKNQRHYLGEDLESMSLKELQNLEQHLDTALKQIRSRKNQLMYESLNNLQRKEKEIQEENSMLAKQVTE 207 566666556666789********************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.679 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.56E-35 | 2 | 111 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-28 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-29 | 117 | 205 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.198 | 121 | 211 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRGRVQLRR IENTINRQVT FSKRRAGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE 60 SWYRETGNKE VTSKYRDQSL TYGDMQFNPK LNHSMEKVLE RYERYSYAER QLKDPDHSHV 120 NMNWSMEYSR LKTKIELLEK NQRHYLGEDL ESMSLKELQN LEQHLDTALK QIRSRKNQLM 180 YESLNNLQRK EKEIQEENSM LAKQVTEREN ILKTSQQNQW KQQHHSHVKQ PQPQPQLHPY 240 MITHQTSPFL NMGGLYQGED PTAARRNNLD LTLEPIYNCS LGCFAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 5e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 5e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 5e-18 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}. | |||||
UniProt | Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK28995.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHDBD | 1e-128 | L36925.1 Arabidopsis thaliana (clone pSK112) CAL gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415910.1 | 1e-144 | transcription factor CAULIFLOWER | ||||
Swissprot | Q6R4S3 | 1e-144 | CAL_BRARR; Transcription factor CAULIFLOWER | ||||
Swissprot | Q6R4S6 | 1e-144 | CAL_BRARC; Transcription factor CAULIFLOWER | ||||
TrEMBL | A0A087GGJ3 | 0.0 | A0A087GGJ3_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GGJ3 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM792 | 25 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 1e-136 | MIKC_MADS family protein |