PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK28953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ARF | ||||||||
Protein Properties | Length: 641aa MW: 72635 Da PI: 6.4693 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.1 | 2e-24 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el KFK28953.1 121 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGENGEL 215 88****************************9643..445569************************************************..449999* PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ KFK28953.1 216 RVGVRRA 222 *****97 PP | |||||||
2 | Auxin_resp | 105.4 | 6.6e-35 | 247 | 326 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++t+++F+v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe++ds+err+sGtvvgv+d++p +W++S Wr L+ KFK28953.1 247 ACHATQTRTMFTVYYKPRT--SQFIISLNKYLEAVSNKFSVGMRFKMRFEGDDSPERRFSGTVVGVKDCSP-HWKESIWRRLE 326 6899**************6..9*************************************************.********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-38 | 113 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-42 | 115 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-20 | 119 | 221 | No hit | No description |
PROSITE profile | PS50863 | 12.731 | 121 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-24 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-22 | 121 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.4E-31 | 247 | 325 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-8 | 503 | 563 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.96E-12 | 523 | 603 | No hit | No description |
PROSITE profile | PS51745 | 26.429 | 527 | 619 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.1E-6 | 571 | 615 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MTNRGGDGDG GEEYLYKELW KLCAGPLVEI PQAEERVFYF PQGHMEQLEA STQHDLNTMK 60 PLFDLPPKIL CSVMNVRLQA EKDTDEVYAQ ITLIPEGTQV DEPMSPDLSR PELQRPKVHS 120 FSKVLTASDT STHGGFSVLR KHATECLPPL DMTQQTPTQE LVAEDVHGYQ WKFKHIFRGQ 180 PRRHLLTTGW STFVTSKRLV AGDTFVFLRG ENGELRVGVR RANRQQNSMP SSVISSHSMH 240 LGVLATACHA TQTRTMFTVY YKPRTSQFII SLNKYLEAVS NKFSVGMRFK MRFEGDDSPE 300 RRFSGTVVGV KDCSPHWKES IWRRLEVHWD EPASISRPDK VSPWEIEPFL TSENVPPVVI 360 KNKRPRQVSE VSALDVGITG SNLWSSGLTQ SREFAQSCIT SQRISPQQIY HDATEDFKNS 420 DWLMSSYSVS NMSKDSTLND QMVFPVEQKK PETTTSYRLF GIDLMSSSLA TAEEKTAPVR 480 PINTTKPSPD SNSDPKSEIS KESEEKKQEP AQASPKEVQS KQSSSSRTRT KVQMQGVPVG 540 RAVDLTALNG YSELIDDLEK LFEIKGELRS RNQWEIVFTD DEGDMMLVGD DPWPEFCNMV 600 KRIFIWSKEE VKKMTPGNRL RVLFSEVETT LTATKTDNHS N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-163 | 5 | 349 | 9 | 355 | Auxin response factor 1 |
4ldw_A | 1e-163 | 5 | 349 | 9 | 355 | Auxin response factor 1 |
4ldw_B | 1e-163 | 5 | 349 | 9 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK28953.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF082176 | 0.0 | AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413488.1 | 0.0 | auxin response factor 9 isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A087GGF1 | 0.0 | A0A087GGF1_ARAAL; Auxin response factor | ||||
STRING | A0A087GGF1 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |