PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28933.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 323aa    MW: 35613.9 Da    PI: 4.9437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28933.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19102152155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdps    r  r +lg++ taeeAa  +++a+ +l+g
  KFK28933.1 102 KKFRGVRQRP-WGKWAAEIRDPS----RrIRLWLGTYNTAEEAAMVYDNAAIQLRG 152
                 59********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.63E-32102159No hitNo description
SMARTSM003801.5E-37103166IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-21103160IPR016177DNA-binding domain
PfamPF008473.3E-12103152IPR001471AP2/ERF domain
PROSITE profilePS5103223.393103160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-29103160IPR001471AP2/ERF domain
PRINTSPR003679.7E-10104115IPR001471AP2/ERF domain
PRINTSPR003679.7E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEAEKKMVTK TNTTKIVPDL PNNQPRILRI SVTDPDATDS SSDDETTTLT SKRRRIKKFI  60
NEVILDSTEP KKKRKRAPPV STKPEITVSS SPVIAPVKTT EKKFRGVRQR PWGKWAAEIR  120
DPSRRIRLWL GTYNTAEEAA MVYDNAAIQL RGPDALTNFS PTPTTETTTE KNPKNPPSPK  180
KKKKQSKNPS PPQSSTSSNS ECLSSPVSVL RSPFAVEEVS GSSIKEETLS SVSVKEETLT  240
TTTETPTFSD FSAEVFTEED LFDFGSSVVP DYLGGGDLFG EDLFTCTDMN FGFDFGSGLS  300
NWLVEDPFQD IGDLFGSDPL LAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20102159159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KRRRI
25274RRRIKKFINEVILDSTEPKKKRK
3176184PSPKKKKKQ
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28933.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0353946e-32AL035394.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F9D16 (ESSAII project).
GenBankAL1615606e-32AL161560.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60.
GenBankAY0574756e-32AY057475.1 Arabidopsis thaliana AT4g23750/F9D16_220 mRNA, complete cds.
GenBankAY1400496e-32AY140049.1 Arabidopsis thaliana putative Ap2 domain protein (At4g23750) mRNA, complete cds.
GenBankBT0150386e-32BT015038.1 Arabidopsis thaliana At4g23750 gene, complete cds.
GenBankCP0026876e-32CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankEF1978466e-32EF197846.1 Arabidopsis halleri miR319a microRNA locus, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413521.11e-130ethylene-responsive transcription factor CRF2
SwissprotQ9SUQ21e-126CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A087GGD10.0A0A087GGD1_ARAAL; Uncharacterized protein
STRINGA0A087GGD10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.29e-94cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]