PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28743.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LSD
Protein Properties Length: 144aa    MW: 15488.6 Da    PI: 7.9676
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28743.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.62.1e-135680125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                Cg+Cr lL YPrG+++V+C++C+ V
  KFK28743.1 56 CGSCRSLLLYPRGSKHVKCSSCQSV 80
                ***********************98 PP
2zf-LSD143.94e-1494118125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 C++C+ lL+YP+GAp+VRC++C+ V
  KFK28743.1  94 CNNCKLLLMYPYGAPAVRCSSCNSV 118
                 ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.2E-175383IPR005735Zinc finger, LSD1-type
PfamPF069439.2E-115680IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.8E-1191119IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-1194118IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEEEEGPPPG WESTVIPSPS PITTVTTAVN PTTTTTAVNP TTTTTAARPE MVQMVCGSCR  60
SLLLYPRGSK HVKCSSCQSV NLVLEADQVG QVNCNNCKLL LMYPYGAPAV RCSSCNSVTD  120
IRENNKRPPW SAQQGPLKSF SSVR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28743.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0117602e-94BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
GenBankBT0123842e-94BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_193892.17e-68lsd one like 2
SwissprotO654266e-69LOL2_ARATH; Protein LOL2
TrEMBLA0A087GFU11e-100A0A087GFU1_ARAAL; Uncharacterized protein
STRINGA0A087GFU11e-101(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-58lsd one like 2