PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 181aa    MW: 20457.5 Da    PI: 4.8078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28412.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-182170255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  KFK28412.1 21 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 70
                59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-302179IPR001471AP2/ERF domain
SMARTSM003805.5E-392184IPR001471AP2/ERF domain
PROSITE profilePS5103222.7872178IPR001471AP2/ERF domain
CDDcd000185.65E-272280No hitNo description
PRINTSPR003678.2E-92233IPR001471AP2/ERF domain
PfamPF008476.0E-122270IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-212279IPR016177DNA-binding domain
PRINTSPR003678.2E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MDSGGATDVA IIAGTRKRER PYKGIRMRKW GKWVAEIREP NKRSRLWLGS YSTPEAAARA  60
YDTAVFYLRG PTARLNFPEL LPGETFSDED LSAANIRKKA TEVGAQVDAL GTAVLNNRHR  120
VFGQNDDDKN FHRNYQNGEG EEEEEEEEKK SSGGGWLLDR VDLNKIPDPE PESSDEDWET  180
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-152278663ATERF1
3gcc_A7e-152278663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28412.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393917.11e-103ethylene-responsive transcription factor ERF010
SwissprotQ9FH944e-98ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A087GEW01e-129A0A087GEW0_ARAAL; Uncharacterized protein
STRINGA0A087GEW01e-130(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-88DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]