PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28411.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 360aa    MW: 40824.1 Da    PI: 7.784
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28411.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.14e-17104153155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  KFK28411.1 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 153
                 78*******************......55************************997 PP
2AP241.53.4e-13196246155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A++  +     +k+++lg f+t+ eAa+ +++a+ k +g
  KFK28411.1 196 SKYRGVTLHK-CGRWEARLGQF--L-GKKYVYLGLFDTEIEAARSYDKAAIKCNG 246
                 89********.7******5553..1.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-16104162IPR016177DNA-binding domain
PfamPF008473.7E-9104153IPR001471AP2/ERF domain
CDDcd000185.21E-11105162No hitNo description
Gene3DG3DSA:3.30.730.103.2E-17105161IPR001471AP2/ERF domain
SMARTSM003806.8E-32105167IPR001471AP2/ERF domain
PROSITE profilePS5103217.899105161IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-16196255IPR016177DNA-binding domain
PfamPF008478.8E-9196246IPR001471AP2/ERF domain
CDDcd000181.29E-23196254No hitNo description
Gene3DG3DSA:3.30.730.101.9E-15197254IPR001471AP2/ERF domain
SMARTSM003807.0E-30197260IPR001471AP2/ERF domain
PROSITE profilePS5103215.369197254IPR001471AP2/ERF domain
PRINTSPR003672.4E-5198209IPR001471AP2/ERF domain
PRINTSPR003672.4E-5236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MWNLNDSPDH HEGTDGRGNR VGHVSSSMNQ FTTWRLSVPP VTRNFFPGQN MEPEVQETYG  60
TSFTRRQCVG HQSDPSGSGR PEEPEPEILP PVKKSRRGPR SRSSQYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF DVEDYVEDLK QMSNLTKEEF  180
MHILRRQSTG FPRGSSKYRG VTLHKCGRWE ARLGQFLGKK YVYLGLFDTE IEAARSYDKA  240
AIKCNGKDAV TNFDPKIYDE EFNPEQWNDH HLDLSLGESN SEEFGQKSEI GSIRTSIRDE  300
DKLLGSDLSL AMATTATVRS EKQSDGGGKR VGMAASSGFS PHHSPWNHHH NPHTFHFPRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28411.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393916.20.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH951e-177TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A087GEV90.0A0A087GEV9_ARAAL; Uncharacterized protein
STRINGA0A087GEV90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-164target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]