PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28408.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family FAR1
Protein Properties Length: 658aa    MW: 75213.8 Da    PI: 6.4576
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28408.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.41.5e-1574136164
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 
                 ++Y+++A+++GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+ 
  KFK28408.1  74 EYYSTFARKCGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDE 136
                 69********************8888.***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-1374135IPR004330FAR1 DNA binding domain
PfamPF105511.6E-22267359IPR018289MULE transposase domain
PROSITE profilePS509669.26526574IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-7546573IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-5549576IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MASKALSNIW IRRQQCPCGD WKCYIRVEGD ESSTWHVSKS EIDSTTTTIT TSLCDSVFMP  60
YVGQIFNTDE EAFEYYSTFA RKCGFSIRKA RSTESQNLGV YRRDFVCYRS GFNQPRKKAN  120
VEHPRERKSV RCGCDEDDQV RLLPAYRKIQ QVDQERILLL SKAGFPVNRI VKLLELEKGV  180
QTGQLPFIEK DVRNFVRAGK KSVQENDAFL TEKRESDMLE LLESCKVLAE RDMGFAYDCT  240
TDESHKVEHL AWAFGDCIQA YSLFGDVVVF DTTYRSITYG LLLGVFFGID NNGKAIVLGC  300
VLLQDESSRS FTWALQTFVR FMRGRHPQTI LTDIDTGFKN AVARELPNTN HVVFMWHVIS  360
KLASWFSQGL GSHYDEFRAG FEILCRAGSV DEFEQQWDLL VTRFGLVPDR HAALLYSCRA  420
SWSPCYIREY FVAQTMTAEF NLSMDSCLKR IVAGQTCMQM LLEEVSAAAS LVKQITPRFP  480
YPSMKTCMPM EDHARGVLTP FAFSVLQNEM VLSVQYAVSE MANGPYIVHH FKKMEGECCV  540
IWNPENEEIH CSCKEFQHSG ILCRHSLRVL SVKNCFHIPD QYFLVRWRQE CPLITAENQH  600
GQGVGDDCAQ TFHSLTETLL TESMISKDRV DYVNQELSAL IDRVRNIAPA NACISHDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007204.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A087GEV60.0A0A087GEV6_ARAAL; Uncharacterized protein
STRINGA0A087GEV60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]