PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28388.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 190aa    MW: 21122.2 Da    PI: 10.5748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28388.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-1674120455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  KFK28388.1  74 FHNLSEKRRRSKINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 120
                 6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.11170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-1474120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1974141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-1575124No hitNo description
Gene3DG3DSA:4.10.280.109.4E-2075127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1876125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010047Biological Processfruit dehiscence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGSSDELSSF LRQVLSPTPI TQPSSPPKRI VSTDRSLPSV HGGAVSSVAG DAFENKRNGA  60
RQRNSLKRNI DAQFHNLSEK RRRSKINEKM KALQKLIPNS NKTDKASMLD EAIEYLKQLQ  120
LQVQTLAVMN GLGLNPMRLP PVLLPTQTRI NETLEPELNL ERMLGAPHSL VNREPPEASQ  180
QMCFSTTTLL
Functional Description ? help Back to Top
Source Description
UniProtRequired for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7272401e-134FR727240.1 Lepidium campestre mRNA for ALCATRAZ-like protein (alc gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393909.11e-102transcription factor ALC isoform X1
SwissprotQ9FHA22e-96ALC_ARATH; Transcription factor ALC
TrEMBLA0A087GET61e-135A0A087GET6_ARAAL; Uncharacterized protein
STRINGA0A087GET61e-136(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139821724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.17e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  4. Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
    Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae).
    Evodevo, 2017. 8: p. 5
    [PMID:28331573]
  5. He H, et al.
    CELLULASE6 and MANNANASE7 Affect Cell Differentiation and Silique Dehiscence.
    Plant Physiol., 2018. 176(3): p. 2186-2201
    [PMID:29348141]