PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28233.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 358aa    MW: 40583.4 Da    PI: 4.6327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28233.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12186229654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  KFK28233.1 186 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 229
                 589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-16183246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10186229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16187245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-5187234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MELSTQMNMF EELLVPTKQE TTDNNNNNYN NNMNNLSFNG GYDHHHNHQI FSNGWNIDYL  60
CFNNNEEEDE NTLLYPSSFM DLISQPPPLL LHHQPPPPSP PPLLSSSTFD YPFLEALQEI  120
IDSSSSSPPL MLPTSQEENY NNNMTPLMES DQSKSFSVGY CGVGEREIVT NKKKSKKLEG  180
QPSKNLMAER RRRKRLNDRL SMLRSIVPKI SKMDRTSILG DAIDYMKELL DKISKLQDEE  240
QELGNCNNSH QSKLFGDLKA LNTNEPLVRN SPKFEVDRRD EDTRVDICCS PKPGLLLSTV  300
NTLETLGVEI EQCVISCFSD FSLQASCSDQ AAEQRGYITT EDIKQALFRN AGYGGSCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12181245569Transcription factor MYC2
5gnj_B1e-12181245569Transcription factor MYC2
5gnj_E1e-12181245569Transcription factor MYC2
5gnj_F1e-12181245569Transcription factor MYC2
5gnj_G1e-12181245569Transcription factor MYC2
5gnj_I1e-12181245569Transcription factor MYC2
5gnj_M1e-12181245569Transcription factor MYC2
5gnj_N1e-12181245569Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171193KKKSKKLEGQPSKNLMAERRRRK
2188195ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0851340.0AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150653.10.0PREDICTED: transcription factor bHLH93
RefseqXP_013643226.10.0transcription factor bHLH93
SwissprotQ9LSL10.0BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A087GED10.0A0A087GED1_ARAAL; Uncharacterized protein
STRINGA0A087GED10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-168beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]