PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28221.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 462aa    MW: 51728 Da    PI: 6.6998
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28221.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.81.3e-13191250155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+ ++ a++k++g
  KFK28221.1 191 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARSYDLAALKYWG 250
                 57*******************666664478446**********99*************98 PP
2AP250.17e-16293344155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  KFK28221.1 293 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 344
                 57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-21191260No hitNo description
SuperFamilySSF541714.58E-16191259IPR016177DNA-binding domain
PfamPF008471.2E-10191250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-15192258IPR001471AP2/ERF domain
SMARTSM003801.5E-27192264IPR001471AP2/ERF domain
PROSITE profilePS5103218.927192258IPR001471AP2/ERF domain
PRINTSPR003671.2E-6193204IPR001471AP2/ERF domain
CDDcd000181.27E-24293352No hitNo description
SuperFamilySSF541714.71E-18293353IPR016177DNA-binding domain
PfamPF008471.1E-9293344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-18294352IPR001471AP2/ERF domain
SMARTSM003801.7E-31294358IPR001471AP2/ERF domain
PROSITE profilePS5103219.269294352IPR001471AP2/ERF domain
PRINTSPR003671.2E-6334354IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAPNWLTFSL SPMEMLKSPD QSHFLSYDAS SSPPYLIDNF YVFKEEADSM ADSATFDNFF  60
DTQTHSQTQI PKLEDFLGDS SSSLQDSSSL AEIYDPRHHH TGVSGFFSDH HSDIVGHGLE  120
TVEEGFHGGC TTEGDLSLGF KKSTEPTLRC NNGERGKSSK KKTESKKEMV VVESSDDSKK  180
KISETTGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEDKAARS  240
YDLAALKYWG PSATTNFPIA TYSKELEEMN HMTKQEFIAS LRRKSSGFSR GASIYRGVTR  300
HHQQGRWQAR IGRVAGNKDL YLGTFTTEEE AAEAYDIAAI KFRGTNAVTN FEMNRYNVEA  360
VMNSSFPVGS GGGTAKRHKL SLESPSSSSS DHNLHQQQLL PPSSSSSELN ANSTIPCGIP  420
FDPSSVLYHQ QNFFQYYPLV SESTTVQVPM TQAEFFLWPN QS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007164.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A087GEB90.0A0A087GEB9_ARAAL; Uncharacterized protein
STRINGA0A087GEB90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]