PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK28206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 34803.1 Da PI: 6.3705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G +W+ ++ g++R++k+c++rw +yl KFK28206.1 14 KGPWTPEEDDKLINYIHKHGHSSWSGLPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++ ++ lG++ W+ Ia++++ gRt++++k++w+++l KFK28206.1 67 RGKFSPEEEQTILNNHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.85 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-25 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.63E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.555 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.75E-12 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGRSPSSDET GLKKGPWTPE EDDKLINYIH KHGHSSWSGL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEQTILN NHAVLGNKWS MIASHLPGRT DNEIKNFWNT HLKKKLINMG 120 FDPMTHRPRT DDIFSSFSQL LSLSNLRGLV GMQQQQVPIE DQALLNLQAE MAKLQLLHYF 180 LQPPPSINPN DLNILNLLIK ENSITSNPDL GFLTAYLQDF NNNLPSLKTI GENFSQNNSP 240 IWLHEPPSLN QTMLPSHDPS ALSDDLARNV DGFGCNQASS SHDQELAATG SGSVDLPDHF 300 FDDSILPYQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK28206.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519646 | 0.0 | AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444505.1 | 1e-171 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_010484333.1 | 1e-171 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_010484334.1 | 1e-171 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_010484336.1 | 1e-171 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_019095871.1 | 1e-171 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9FJP2 | 1e-161 | MYB53_ARATH; Transcription factor MYB53 | ||||
TrEMBL | A0A087GEA4 | 0.0 | A0A087GEA4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GEA4 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 1e-159 | myb domain protein 53 |
Publications ? help Back to Top | |||
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