PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28113.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CAMTA
Protein Properties Length: 1060aa    MW: 118560 Da    PI: 5.822
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28113.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.78.5e-57191362118
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkD ++w+kkkdgktv+E+hekLKvg++++l+cyYah+e+n+ fqrrcy
  KFK28113.1  19 LSEaQHRWLRPAEICEILRNHQKFHISSEPPNRPSSGSLFLFDRKVLRYFRKDAHNWRKKKDGKTVKEAHEKLKVGSIDMLHCYYAHGEDNEYFQRRCY 117
                 45559********************************************************************************************** PP

        CG-1 100 wlLeeelekivlvhylevk 118
                 w+Le++l +iv+vhylevk
  KFK28113.1 118 WMLEQDLMHIVFVHYLEVK 136
                 ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143785.12515141IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-8318136IPR005559CG-1 DNA-binding domain
PfamPF038595.3E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.1E-4464554IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.4E-14470556IPR014756Immunoglobulin E-set
SuperFamilySSF484031.38E-19648763IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.473652734IPR020683Ankyrin repeat-containing domain
PfamPF127965.5E-8653729IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-18655767IPR020683Ankyrin repeat-containing domain
CDDcd002041.17E-15658761No hitNo description
PROSITE profilePS500889.351669701IPR002110Ankyrin repeat
SMARTSM002481500669698IPR002110Ankyrin repeat
SMARTSM002480.0014702731IPR002110Ankyrin repeat
PROSITE profilePS5008811.247702734IPR002110Ankyrin repeat
SuperFamilySSF525401.19E-8876926IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.11876898IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.425878906IPR000048IQ motif, EF-hand binding site
PfamPF006120.0017878897IPR000048IQ motif, EF-hand binding site
SMARTSM000158.9E-4899921IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.706900924IPR000048IQ motif, EF-hand binding site
PfamPF006123.7E-4901921IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1060 aa     Download sequence    Send to blast
MADRGSFGFA PRLDIQQLLS EAQHRWLRPA EICEILRNHQ KFHISSEPPN RPSSGSLFLF  60
DRKVLRYFRK DAHNWRKKKD GKTVKEAHEK LKVGSIDMLH CYYAHGEDNE YFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRT SSSGIKENNS NSLSGTASVN IDSAATPSST LSPLCEDADS  180
GDSHQASSSL QANREPQSVA PLIRHQQNAS TMNSYNPSSI LGNGDGWTSA PGIGIVSQVH  240
GNRVKDNESQ RSVDVPAWDA SFENSLARYQ NLPYNALLTQ TQHSNTGLMP VGGNTEKGSP  300
LMAEHLRNPL QTQLNWQIPV QDSLPLQKWP MDSHSGMTDD ADLALLEQRA RENFGTFSSL  360
LGSQNQQPIM GSFQAPFTSI EAAYIPQLGP EDLLYEASAN QTLPLRKSLL KKADSLKKVD  420
SFSRWVNNEL GEMEDLHMQS SSEGLAWTAV GTAAAASSLS PSLSEHQRFT IIDFWPKSSQ  480
TDEEVEVMVI GTFMLSPQDV TSYSWSCMFG EVEVPAEILV DGVLYCHAPP HEIGQVPFYV  540
TCSDRFSCSE VREFDFLPGS PKKFDTTDIY GAFTNETSLH LRFANLLARR SLVQEHIFED  600
VGEKRRKIRD IMLLIDEKES LVPGTTEKDL PEMEARERLI REEFEDKLYL WLIHMVTEEG  660
KGPNILDTEG QGVLHLAAAL GYDWAIKPIL AAGVSINFRD ANGWSALHWA AFNGREDTVA  720
VLVSLGADAG ALTDPSPELP LGKTASDLAY GNGHRGISGF LAESSLTSYL EKLTVDAKEN  780
SSADSSKAKA VQTVAERTAT PISYSDVPET LSMKDSLTAV LNATQAADRL HQVFRMQSFE  840
RKQLSEFGDD QLDISDELAV SFAAAKSKKA GHSNGTVHAA AVQIQKKYRG WKKRKEYLLL  900
RRRVVKIQAH VRGHQVRKQY RTIIWSVGLL EKIILRWRRK GSGLRGFKRE TVTMSPEPVS  960
VAPQEDDYDF LKEGRKQTEE RLQKALTRVK SMAQYPEARA QYRRLLTVVE GFRENEASSS  1020
SAMNNNNSNT EEAANYNEDD DLVDIDSLLD DDTFMSLAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28113.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394184.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A087GE110.0A0A087GE11_ARAAL; Uncharacterized protein
STRINGA0A087GE110.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]