PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27960.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 256aa    MW: 28096.3 Da    PI: 5.4125
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27960.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161577148
                     TSSS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...............tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lvd  + +Ggg               +W+ +++  g++R++k+c++rw +yl
       KFK27960.1 15 KGPWTVEEDSKLVDFLRTHGGGsgggggggggggggwCWRDVPKLAGLRRCGKSCRLRWTNYL 77
                     79***********************************************************97 PP
2Myb_DNA-binding53.65.1e-1783127147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E +l++d+++++G++ W++Ia +++ gRt++++k++w+++
       KFK27960.1  83 RGLFSEDEIQLIIDLHARFGNR-WSKIATELP-GRTDNDIKNYWNTH 127
                      7889******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-19680IPR009057Homeodomain-like
PROSITE profilePS5129410.4951077IPR017930Myb domain
SuperFamilySSF466892.4E-2412124IPR009057Homeodomain-like
SMARTSM007176.7E-111479IPR001005SANT/Myb domain
PfamPF002491.3E-131577IPR001005SANT/Myb domain
CDDcd001679.48E-51777No hitNo description
PROSITE profilePS5129426.54778132IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2681133IPR009057Homeodomain-like
SMARTSM007177.4E-1782130IPR001005SANT/Myb domain
PfamPF002491.2E-1583127IPR001005SANT/Myb domain
CDDcd001674.88E-1286128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGGRKPCCDE VGLRKGPWTV EEDSKLVDFL RTHGGGSGGG GGGGGGGGGG WCWRDVPKLA  60
GLRRCGKSCR LRWTNYLRPD IKRGLFSEDE IQLIIDLHAR FGNRWSKIAT ELPGRTDNDI  120
KNYWNTHIKR KLIRMGIDPN THRRFDQEKV NHEEEKIVVN GQKTQNPPSE TEVPVVLHND  180
TSAPSSGNID KLADVEGDDQ PWSFLMENDG GGGGVAGELT MLLAGDITSS CSSSSSLWLK  240
YGDLGYEDLE FGCFDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251313225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00577DAPTransfer from AT5G62320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483899.11e-137PREDICTED: protein ODORANT1-like
SwissprotQ50EX64e-65ODO1_PETHY; Protein ODORANT1
TrEMBLA0A087GDK80.0A0A087GDK8_ARAAL; Uncharacterized protein
STRINGA0A087GDK80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-129myb domain protein 99
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]