PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK27900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 38406.5 Da PI: 8.4387 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.3 | 5.9e-57 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL+kkv ++++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++l KFK27900.1 16 LPPGFRFHPTDEELITHYLHKKVLDTSFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKSL 112 79***************************9.89***************8888899***************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy+grapkg+kt+Wvmheyrle KFK27900.1 113 VGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-65 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.215 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-30 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE VDLNKSEPWE 60 LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LEGKFSPHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR 180 IGSLGTDFNP SLLPSLTDSS PYIDKTKTEP VYVPCFSNQT DRAQGTTLNC FNSPVLNSIQ 240 TDIFQRIPLY QTQSLQASGN LQNPILAQEH SVLQAMIDNN RRQSLKTMSV SQETAVSTDM 300 NTDISSDFEL GKRRFDHQED PSSSAGPVDL ESFWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK27900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY054644 | 0.0 | AY054644.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds. | |||
GenBank | AY081496 | 0.0 | AY081496.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds. | |||
GenBank | AY085102 | 0.0 | AY085102.1 Arabidopsis thaliana clone 12970 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200951.1 | 0.0 | NAC domain containing protein 100 | ||||
Swissprot | Q9FLJ2 | 0.0 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A087GDE8 | 0.0 | A0A087GDE8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GDE8 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 0.0 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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