PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27804.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 239aa    MW: 26487.4 Da    PI: 4.9331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27804.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-13173218655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  KFK27804.1 173 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 218
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16170230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.67E-12171222No hitNo description
Gene3DG3DSA:4.10.280.104.7E-16172231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-13173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MQSTHVGGNS GGGGGSGLAR IRSAPANWIE TLLEDDEEDA LKPNLCLTEL LTGNSGEITS  60
RDSFEFPSPV EYNHQGGFHR QNSSPADFLS GSGAGSDGFF SNFGIPASYD YVDMSPVSKR  120
SREMDAHFSS QMKEEEMSGG VSGMMDMNMD KLLEDSVPCR VRAKRGCATH PRSIAERVRR  180
TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQRR CVCKPKEEQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107915.11e-140PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-129BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A087GD521e-178A0A087GD52_ARAAL; Uncharacterized protein
STRINGA0A087GD521e-179(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-103bHLH family protein