PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK27762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | CO-like | ||||||||
Protein Properties | Length: 351aa MW: 38195.5 Da PI: 5.6609 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.4 | 1.3e-07 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ + l+C+ + +lC +C +++H KFK27762.1 4 KLCDSCKSATAALYCRPDAAFLCLSCDSKIHAA 36 58*****************************54 PP | |||||||
2 | zf-B_box | 27.5 | 6.6e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ KFK27762.1 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91 689*****************************66899999*99986 PP | |||||||
3 | CCT | 68.3 | 2.1e-23 | 284 | 327 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re +++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ KFK27762.1 284 RELRVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 327 899***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.7E-13 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.352 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.14E-8 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.893 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-7 | 46 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.80E-10 | 47 | 91 | No hit | No description |
SMART | SM00336 | 1.3E-10 | 49 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.42 | 284 | 326 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.1E-17 | 284 | 326 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKIHAANKLA SRHARVWMCE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDTVSG TVKHTAVNSL DDCYFSDLDG 120 NGSREEEEEE AASWLLLPNP KTTVVATAAE TVPGDSPEMN TGQQYLFSDP DPYLDLDYGT 180 VDPKVEAQEQ NSSGTDGVVP VENRTVRIPT VNENCYELDF TGGSKGFTYG YNCISHSVSS 240 SSLEVGVVPD GGSVADVSYP YGGPATSGTD PGTQRAVPLT SAERELRVMR YREKRKNRKF 300 EKTIRYASRK AYAEMRPRIK GRFAKRTDTN ENNDVGSHGG IFGGFGLVPT F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK27762.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493757 | 0.0 | AB493757.1 Arabidopsis thaliana At5g24930 mRNA for hypothetical protein, partial cds, clone: RAAt5g24930. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197875.3 | 0.0 | zinc finger CONSTANS-like protein | ||||
Swissprot | Q940T9 | 0.0 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A087GD10 | 0.0 | A0A087GD10_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GD11 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 0.0 | CONSTANS-like 4 |