PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK27554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ARR-B | ||||||||
Protein Properties | Length: 670aa MW: 73849.1 Da PI: 6.7464 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.2 | 1.8e-28 | 207 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av++L G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ KFK27554.1 207 KPRVVWSVELHQQFVAAVNHL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 260 79*******************.********************************7 PP | |||||||
2 | Response_reg | 76.5 | 1e-25 | 25 | 133 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+ y +v+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + Ga KFK27554.1 25 VLVVDDDPTCLMILERMLRTCLY-RVTKCNRAEIALSLLRKNKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHGAV 119 89*********************.***************999889**********************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + KFK27554.1 120 DYLIKPVRIEALKN 133 **********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.9E-198 | 4 | 662 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 3.42E-35 | 21 | 155 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.3E-41 | 22 | 170 | No hit | No description |
SMART | SM00448 | 1.4E-29 | 23 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.441 | 24 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.1E-22 | 25 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.68E-27 | 26 | 138 | No hit | No description |
PROSITE profile | PS51294 | 11.378 | 204 | 263 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.13E-19 | 205 | 264 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 206 | 265 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 207 | 260 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-8 | 209 | 259 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MINPGQGRGP DSVNSDPFPT TGLRVLVVDD DPTCLMILER MLRTCLYRVT KCNRAEIALS 60 LLRKNKNGFD IVISDVHMPD MDGFKLLEHV GLEMDLPVIM MSADDSKSVV LKGVTHGAVD 120 YLIKPVRIEA LKNIWQHVVR KKRNEWNVSE QSGSIEEIGG DRQQQREDAD NNSSSVNEGN 180 WKSSRKRKEE EVDELEGDKE DASSLKKPRV VWSVELHQQF VAAVNHLGVD KAVPKKILEM 240 MNVPGLTREN VASHLQKYRI YLRRLGGVSQ HQGNMNNSFM TGQDPNFGPL SQLNGFDLQA 300 LAVAGQLPAQ SLAQLQAAGL SLPSLAKPGM SVSPLVDQRS IFSFENPKIR FGDGHGQMMN 360 SGNKPMNLLH GVPTGMEPKQ FAGNHMRVQQ PITGVRAVPN VQSSGMLMPV ADQLPRGGPS 420 MLPSLGQQPT LSSSIVSRRS DLTDSVAVRN SIPETSSSRV LPATHSVFNN FPSELPRNSF 480 PLASAPGISI PTSVSYQEEV SSSDATAATG NLSYNIFNDF PQQQQHHHNN NKLNDWDLRN 540 IGLVFNSHQD TAAAAASASF STSEAYSSSS TQRKRRQIDV TAINHMQNHH HQPPPSRSVN 600 HMNQVYMDGG SVRVKSERMA ETVTCPPSTT LFHEQYNQDD LMSALLKQEG IPSVDNEFDF 660 DGYSIDNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-22 | 203 | 265 | 1 | 63 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 571 | 576 | QRKRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK27554.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286049.2 | 0.0 | two-component response regulator ARR2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A087GCF2 | 0.0 | A0A087GCF2_ARAAL; Two-component response regulator | ||||
STRING | A0A087GCF2 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |