PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27549.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 569aa    MW: 62888.5 Da    PI: 7.431
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27549.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-17167216155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  KFK27549.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 216
                 78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-15167224IPR016177DNA-binding domain
CDDcd000184.03E-11167223No hitNo description
PfamPF008471.5E-8167216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-16168224IPR001471AP2/ERF domain
SMARTSM003801.3E-30168230IPR001471AP2/ERF domain
PROSITE profilePS5103217.359168224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MLDLNLDVES TESTQNRRDL TKGVSGGAMD ESVTSNSSVV NADASSCIDG EEELCSTRAV  60
KFQFEILKGG LGGEEDEEEE EEVEGRSVVM MTKEFFPVAT KSDGDCVSYL DSNAQSSRSS  120
VDISFQRGKQ GGDFLSGCGS GGDGLRVMQP PAQPVKKSRR GPRSKSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AVKFRGLEAD INFIISDYEE DIKQMANLSK  240
EEVVQVLRRQ SSGFSRNNLR HQGVAMQKIG GWGAQMEQFH GNMKFCNTNC SESYVNRACD  300
KAAIKWNGRE AASFIEPHAS RMIPEAANVM LDLNLRISLS LGDSPKQKDR SLRFHNVPNG  360
IICGRSSKVY IFLCSSPDMI YFTFRCVLLQ PLLKCFSVDI YSQQLKATFR LTSSSPRGSS  420
LIHEFLALWF ALHSQMENNM AAATCNTPFN FLKRGSDHIS NHHGLPPAFF SHTERTSEKG  480
LMLHPSQSLQ ARTWQAQDQS SGGTATVLNA ASSGFSLAAA THPPSSTATL HPSQPFLNLN  540
LPGLYVIHPN DYTSQQHHHH LMNRPQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27549.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190576.10.0target of early activation tagged (EAT) 2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A087GCE70.0A0A087GCE7_ARAAL; Ethylene-responsive transcription factor rap2-7
STRINGA0A087GCE70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.20.0target of early activation tagged (EAT) 2