PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27414.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 429aa    MW: 48349.8 Da    PI: 9.4475
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27414.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-17105151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q+G + W+ I++++  gR +kqc++rw+++l
       KFK27414.1 105 KGQWTAEEDRKLIRLVRQHGERKWAMISEKLE-GRAGKQCRERWHNHL 151
                      799*****************************.*************97 PP
2Myb_DNA-binding55.61.2e-17158199245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+ +lvda+++ G++ W+ Ia+ ++ gRt++++k++w+
       KFK27414.1 158 DGWSEEEEIILVDAHTRIGNK-WAEIAKLIP-GRTENSIKNHWN 199
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.224100155IPR017930Myb domain
SuperFamilySSF466893.18E-29102198IPR009057Homeodomain-like
SMARTSM007175.0E-16104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-26106158IPR009057Homeodomain-like
CDDcd001671.98E-15108151No hitNo description
PfamPF139213.0E-19108166No hitNo description
SMARTSM007172.3E-14156204IPR001005SANT/Myb domain
PROSITE profilePS5129417.866156206IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-20159204IPR009057Homeodomain-like
CDDcd001675.58E-11160202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEGRRLAHGA APPLTAVERF LYGQKNDALS SKRQESSRDR SIVKSKMSME IRSDNKENMT  60
FAPRKEKHLV LNGENRSPIG DMVAKGAARD YQISTKKRPY KNLIKGQWTA EEDRKLIRLV  120
RQHGERKWAM ISEKLEGRAG KQCRERWHNH LRPDIKKDGW SEEEEIILVD AHTRIGNKWA  180
EIAKLIPGRT ENSIKNHWNA TKRRQNSKRK HKRQSNADNN NSDPSPSAKR PCILQDYIKS  240
IENNPVNKDT DENKNENTIS VLSTPTLDHI YSDGDSVSSV LGDPYDDELV YLQNIFANHP  300
MSLESIGLSQ SSDEVSQSSS SGFMIKSPKP SPNFHNNVGT HHHDQAMATL PANTPHLPSD  360
IYLSYLLNGS TSSYSNSHFP SSSSSTSSTT VEHGGYNGFL APQVTSTSER REMDLIEMLQ  420
GSNIGFPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-441032052104C-Myb DNA-Binding Domain
1msf_C7e-441032052104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201212KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27414.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401032.10.0transcription factor MYB119
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLA0A087GC120.0A0A087GC12_ARAAL; Uncharacterized protein
STRINGA0A087GC120.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]