PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27364.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 431aa    MW: 49037.7 Da    PI: 4.7769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27364.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10382429247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE e l ++vk++G   Wk I +  +     Rt+ ++k++w+++
       KFK27364.1 382 KFWTPEEVEGLREGVKEYGRS-WKDIKNANPtvfAERTEVDLKDKWRNL 429
                      67*****************55.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-12375431IPR009057Homeodomain-like
PROSITE profilePS5129415.91376431IPR017930Myb domain
SuperFamilySSF466891.27E-12378430IPR009057Homeodomain-like
SMARTSM007170.0018380431IPR001005SANT/Myb domain
CDDcd116604.41E-15382431No hitNo description
PfamPF002498.5E-8384429IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEVIDKWVAE FIIRRQQNPR VSPSNLLSAL RFGDSPDCLK LKISSVLRDI SNSLIRGTID  60
EGTLDLLEML EKLHLQEHSV LMESHKSAYC WTAVECTVRF MWPLSSSDGF FTDALERIWT  120
KRIEVLKESG SGLVSNELLK WEADLKIALE DSEMYQRIRE SNIRYTAISL LNQLLKEQWE  180
ILGSSALELV SQRTFLKRKA QNVDNRGDPN HVDESMRRGT SEEEDGNENN RENANDVEGV  240
RCLEGDGIDK VNAADEEETM SAQEEEPEPS LDKGDKTVAR ELKEFLLEIQ GHIDSSTRKE  300
EQEPNNGIDY SVDVTPQPAR GNRTGTSRQV RNETPEQDSA NEKGSGSQGT WSGRVGPRLP  360
TPVPLNVSPL KKENSNARRP KKFWTPEEVE GLREGVKEYG RSWKDIKNAN PTVFAERTEV  420
DLKDKWRNLV R
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27364.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401097.20.0uncharacterized protein LOC18018067 isoform X1
TrEMBLA0A087GBW20.0A0A087GBW2_ARAAL; Uncharacterized protein
STRINGA0A087GBW20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein