PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27307.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 341aa    MW: 37963.7 Da    PI: 6.304
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27307.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071957339
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                +r C+ +++  +  fC+ ++ +lC +C + +H+   H++
  KFK27307.1 19 ARSCDGCKSVTAAVFCRVDSAFLCITCDTRIHSFtrHER 57
                578******99*********************6577876 PP
2zf-B_box25.82.1e-0857103242
    zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                 + ++C+ +e+ +    C+ +   lC +C + +H+       H++vp+
  KFK27307.1  57 RVWICEVCEQAPSAVTCKADAASLCVTCDSDIHSAnplasrHERVPV 103
                 5689*****************************66999999999986 PP
3CCT70.83.4e-24272315144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  KFK27307.1 272 REARVMRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 315
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1111760IPR000315B-box-type zinc finger
SMARTSM003366.9E-81760IPR000315B-box-type zinc finger
PfamPF006436.3E-62058IPR000315B-box-type zinc finger
CDDcd000213.01E-82060No hitNo description
PROSITE profilePS5011910.23956103IPR000315B-box-type zinc finger
PfamPF006434.6E-657103IPR000315B-box-type zinc finger
CDDcd000218.09E-859103No hitNo description
SMARTSM003362.9E-861103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.926272314IPR010402CCT domain
PfamPF062032.3E-18272314IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGFCLENIKS ISGGWNAAAR SCDGCKSVTA AVFCRVDSAF LCITCDTRIH SFTRHERVWI  60
CEVCEQAPSA VTCKADAASL CVTCDSDIHS ANPLASRHER VPVSSFFDSH VAKTTFGLLG  120
SSATTVDMIS VPVMDNDLDL CPWLLPNDFN EPAKIEIGSC NEMKATDYMF SDFDRLIDFE  180
YPNSGGDSLV PVQTKTEPLP VTNNNNINDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSM  240
EYGVVPERNN SVSEISVPVN RSMTTTGDQM DREARVMRYR EKRKNRKFEK TIRYASRKAY  300
AESRPRIKGR FAKRTETEND DVFLSHVYAS AAAQYGVVPT F
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27307.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0181182e-59AB018118.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRI1.
GenBankCP0026882e-59CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452640.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X1
RefseqXP_019092606.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X2
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A087GBQ50.0A0A087GBQ5_ARAAL; Constans-like zinc finger protein
STRINGA0A087GBQ50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]