PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK27243.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

MYB_related

Protein Properties

Length: 230aa MW: 24964.5 Da PI: 10.3236

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK27243.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.9e-12	91	135	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++++ q+ s+ qky KFK27243.1 91 PWTEEEHRTFLIGLEKLGKGDWRGISRNFVVTKSPTQVASHAQKY 135 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.648	83	140	IPR017930	Myb domain
SuperFamily	SSF46689	2.77E-16	86	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-18	87	139	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.7E-10	88	134	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-8	88	138	IPR001005	SANT/Myb domain
CDD	cd00167	3.10E-8	91	136	No hit	No description
Pfam	PF00249	2.9E-10	91	135	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGRRCSHCGT VGHNSRTCSS YRTGAIRLFG VHLDTASSSP LPPPPSILAV AMKKSFSMDC 60 LPACSSSSSS FAGYLSDGLA HKTPDRKKGV PWTEEEHRTF LIGLEKLGKG DWRGISRNFV 120 VTKSPTQVAS HAQKYFLRQA TTLNHKRRRT SLFDMVSAGK VEQNSTIQSI CNDRIGSTPI 180 VAWKQGLVNP PLGYPNPKVP GSVNSDGLDL ELKLASLQSP ESNIRPISVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00565	DAP	Transfer from AT5G56840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK27243.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519517	0.0	AY519517.1 Arabidopsis thaliana MYB transcription factor (At5g56840) mRNA, complete cds.
GenBank	BT012528	0.0	BT012528.1 Arabidopsis thaliana At5g56840 gene, complete cds.
GenBank	BT014956	0.0	BT014956.1 Arabidopsis thaliana At5g56840 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010451524.1	1e-137	PREDICTED: uncharacterized protein LOC104733656
Swissprot	Q7XC57	1e-46	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A087GBJ1	1e-170	A0A087GBJ1_ARAAL; Uncharacterized protein
STRING	A0A087GBJ1	1e-170	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5496	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	1e-130	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]