PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK27240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HRT-like | ||||||||
Protein Properties | Length: 478aa MW: 53930.7 Da PI: 9.9596 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 58 | 1.6e-18 | 275 | 305 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvile+G +C+r+PvkgRKRC eHKG+Ri KFK27240.1 275 VCGVILENGGFCNRSPVKGRKRCIEHKGQRI 305 7*****************************7 PP | |||||||
2 | HRT-like | 53.5 | 4.1e-17 | 329 | 359 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil + +C+++Pv+gRKRCeeHKGmRi KFK27240.1 329 MCGVILPNMEPCNKSPVPGRKRCEEHKGMRI 359 6*****************************7 PP | |||||||
3 | HRT-like | 24.3 | 5.2e-08 | 398 | 425 | 2 | 29 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 C +++++G +C+r+ kg K C++HK++ KFK27240.1 398 CEATTKNGLPCTRSSPKGSKKCWQHKDK 425 99************************85 PP | |||||||
4 | HRT-like | 54.6 | 1.8e-17 | 445 | 474 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l +G +C+r+PvkgRKRC+eHKGmRi KFK27240.1 445 CGVKLCNGLICERSPVKGRKRCQEHKGMRI 474 *****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MDFGDGVCIA VVPTMFKRED YKRTKHDAVF SKWKVLIGPK DWEDFKNGKD GVGRYRVQNL 60 PRKSYPGLYE LGVAVIDQDQ GRKLDSDIVL AAYLGQAESV RSRLQRYGRS GAHLRNVNYF 120 NDCETIDSLD NKVVTTGLFE AIFSKEGSVV YRWAPMGSKR EAEATEGMLL STFDYAWNKG 180 SNGERRQVDL LKKLGDRGFM SKRKSGISQV LFPFLRKQVG IKIKGEKHVL KQESKVSYDV 240 HEGKKSSSFL ASIFKLSRSR PQSFSDRFDE IGGSVCGVIL ENGGFCNRSP VKGRKRCIEH 300 KGQRICCVSV EKQQPLKPEV HDHKDSDVMC GVILPNMEPC NKSPVPGRKR CEEHKGMRIN 360 AFLFLFNRTD REKTVKDEKS NPESRTKINE EETTTRFCEA TTKNGLPCTR SSPKGSKKCW 420 QHKDKTSGDN LPENVHTVTG VHVACGVKLC NGLICERSPV KGRKRCQEHK GMRITSSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK27240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866167.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
Swissprot | F4K933 | 0.0 | ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A087GBI8 | 0.0 | A0A087GBI8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GBI8 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 0.0 | effector of transcription2 |