PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK26990.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

GRF

Protein Properties

Length: 342aa MW: 37733.4 Da PI: 8.5374

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK26990.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	110	153	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCs++v++++k+CErHlhrgr rsrk++e+ KFK26990.1 110 LEPGRCRRTDGKKWRCSKEVVSNHKYCERHLHRGRPRSRKHVEP 153 69***************************************997 PP
2	QLQ	52.2	1.9e-18	59	89	2	32
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FT+aQl +L++Q+++yKy++a++PvP +Ll KFK26990.1 59 PFTNAQLKELERQAMIYKYMIASVPVPFDLL 89 9****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-10	58	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.645	59	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-11	59	89	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.182	109	153	IPR014977	WRC domain
Pfam	PF08879	1.6E-19	111	152	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDFLKVSDKT TTIPCTSDSL FGLNEQQFGF RDMEIHPPHP HLITPYAGNG VLGCYYYYPF 60 TNAQLKELER QAMIYKYMIA SVPVPFDLLI SSSSSSSVSP CNNKNIAGDL EPGRCRRTDG 120 KKWRCSKEVV SNHKYCERHL HRGRPRSRKH VEPPYSRPIN NNGASEKNRN FPQKLSVKEP 180 KEVSISSSLS NYKESRAKTE EENKYLNFID IWSEKRSTTS TPVSSSNGNL SLYSLDLSMG 240 GGGNNLMGHD EMGLIQMGLG IIGSGREDPY GVSSLEEMSS WLAPKSATPG GPLAEILRPN 300 PSFVFSGGME SYSVTATATP SSSPSRVVKK INGSVSDESS HI

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDFLKVSDKT TTIPCTSDSL FGLNEQQFGF RDMEIHPPHP HLITPYAGNG VLGCYYYYPF  60
TNAQLKELER QAMIYKYMIA SVPVPFDLLI SSSSSSSVSP CNNKNIAGDL EPGRCRRTDG  120
KKWRCSKEVV SNHKYCERHL HRGRPRSRKH VEPPYSRPIN NNGASEKNRN FPQKLSVKEP  180
KEVSISSSLS NYKESRAKTE EENKYLNFID IWSEKRSTTS TPVSSSNGNL SLYSLDLSMG  240
GGGNNLMGHD EMGLIQMGLG IIGSGREDPY GVSSLEEMSS WLAPKSATPG GPLAEILRPN  300
PSFVFSGGME SYSVTATATP SSSPSRVVKK INGSVSDESS HI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK26990.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002864265.1	0.0	growth-regulating factor 7
Swissprot	Q9FJB8	1e-178	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	A0A087GAT8	0.0	A0A087GAT8_ARAAL; Uncharacterized protein
STRING	A0A087GAT8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-133	growth-regulating factor 7

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]