PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26902.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ZF-HD
Protein Properties Length: 305aa    MW: 33314.9 Da    PI: 8.9174
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26902.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.47.3e-3356112459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  +++keClkNhAaslGgha+DGCgEfmps+++  +++++lkCaACgCHRnFHRre+++
   KFK26902.1  56 FTFKECLKNHAASLGGHALDGCGEFMPSPSSIsTDPTSLKCAACGCHRNFHRREPDH 112
                  689*************************9999899*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.0E-2857110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-1758110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.89158109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-3158109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.32E-17174244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27175245IPR009057Homeodomain-like
TIGRFAMsTIGR015655.9E-24185242IPR006455Homeodomain, ZF-HD class
CDDcd000860.00831186248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMDTITTPTP TPPTTTTIPK SPEPESETPT RIQPAKPISF SNGIIKRHHH NHHHIFTFKE  60
CLKNHAASLG GHALDGCGEF MPSPSSISTD PTSLKCAACG CHRNFHRREP DHNNNNSTST  120
ISAAIEYQPH HRHQPLPPPS PPSSPPPISS SYMLLSLSGT NNNNLAFSDL NFNNHNPPNN  180
QIGSRKRFRT KFTQFQKEKM HEFADRVNWK MQKRDEDDVR QFCNQIGVDK SVLKVWMHNN  240
KNTFNNRRDP PFSVAGTTEI RKTESLPIPN GGGHSVSSGG GGGGGGGFDS DSGGAHGCVN  300
GSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-201842431675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
UniProtPutative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26902.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-91AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankAK2284841e-91AK228484.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-09-C01.
GenBankAY0863951e-91AY086395.1 Arabidopsis thaliana clone 249321 mRNA, complete sequence.
GenBankAY0910341e-91AY091034.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds.
GenBankAY1173471e-91AY117347.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds.
GenBankCP0026881e-91CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405598.11e-108zinc-finger homeodomain protein 10
SwissprotQ9FIW98e-89ZHD10_ARATH; Zinc-finger homeodomain protein 10
SwissprotQ9LHF07e-89ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A087GAK00.0A0A087GAK0_ARAAL; Uncharacterized protein
STRINGA0A087GAK00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-65homeobox protein 34
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]