PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26863.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 197aa    MW: 22792.9 Da    PI: 9.1849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26863.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l  +++ +G g+W+ I+r+ g++R +k+c++rw +yl
       KFK26863.1 14 RGLWKPEEDMILRSYIETHGEGNWADISRKSGLKRGGKSCRLRWKNYL 61
                     788*****************************99************97 PP
2Myb_DNA-binding57.14.2e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
       KFK26863.1  67 RGSMSPEEHDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.266961IPR017930Myb domain
SMARTSM007178.7E-141363IPR001005SANT/Myb domain
SuperFamilySSF466894.77E-2913108IPR009057Homeodomain-like
PfamPF002499.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-221568IPR009057Homeodomain-like
CDDcd001672.46E-101761No hitNo description
PROSITE profilePS5129427.11362116IPR017930Myb domain
SMARTSM007179.7E-1766114IPR001005SANT/Myb domain
PfamPF002493.7E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2469115IPR009057Homeodomain-like
CDDcd001676.15E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEKRVEERKT LVKRGLWKPE EDMILRSYIE THGEGNWADI SRKSGLKRGG KSCRLRWKNY  60
LRPNIKRGSM SPEEHDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKCHSSK  120
QNAPGSIGTI PFIDKPVMST EVRRSHGEGE GGEEDNTWME ETNCFGYDVR IGSPVSHYPD  180
TLVFDPCFAF TDFFPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26863.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196371e-160AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_680426.11e-117myb domain protein 82
SwissprotQ9LTF71e-118MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A087GAG11e-145A0A087GAG1_ARAAL; Uncharacterized protein
STRINGA0A087GAG11e-145(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-116myb domain protein 82