PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26857.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 587aa    MW: 63973.1 Da    PI: 5.2099
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26857.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.66.2e-1082195872374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ ++e+A+a+++g++e a+++L+++ +  +p++++ ++l+ ++++AL+ r++     + +++     +e   +e+l +++l++e+sP++k+++++aN 
  KFK26857.1 219 RQMVMEIATAIAEGKTEIASEILSHVTK--NPKRNSEEKLVDFMLNALRLRINP----VESSV-----PELYGKEHLISTQLLYELSPCFKLGFMAANL 306
                 6889********************9975..7999*******************9....32222.....2234789************************ PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                 aIl++ + e+++H+iDf+i++G+Q+++Ll+aL++R++g   ++iT+v++++ +        +e+l+++g+ L+k+ ++lg++++fnv+++ rl dl+ e
  KFK26857.1 307 AILDSNDDEKEIHVIDFEIGEGGQYVNLLHALSTRRNG-KAVKITAVANNNDDgfvvgdgGEERLNTVGDMLRKLGDRLGISVRFNVVTSLRLGDLSRE 404
                 ***********************************998.78********98889*****99**************************9999******** PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 +L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n++sFl r++e + +y al+ds+e+++p+++++r+ vE+  +g
  KFK26857.1 405 SLGCDPDEPLAVNLAFKLFRVPDESVCVENPRDELLRRVKGLKPRVVTLVEQEINSNTASFLSRVSELCACYGALLDSVESTVPSTNSDRARVEEG-IG 502
                 ************************************************************************************************.** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r+++n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l + k    g++v+e++g++++gW++r+L ++SaWr
  KFK26857.1 503 RKVMNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRLDNGKrvHPGFTVKEDNGAVCFGWMGRTLAVASAWR 587
                 **************************************************98877779**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.623192565IPR005202Transcription factor GRAS
PfamPF035142.1E-105219587IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MASGFSGGGG GPEFYGVGGR SMPGGPGTVI NSGNNNPQPA YMNQIPGIFL DQIGNRVGKR  60
TLADFQAAQY NHQQQQPFHN QAALNAFLLR SVKPRTFHSP TMIDLTSINN DMSFFGGGSS  120
LRYGLPLLPN PSLTGVPCID PVQNRLHESE NTLNSLRELE KQLLDDDDDE CGDDDVSVIT  180
HSKNDWMNSL VASSSSPSSS SSSSSPSTAS TTTSVSSSRQ MVMEIATAIA EGKTEIASEI  240
LSHVTKNPKR NSEEKLVDFM LNALRLRINP VESSVPELYG KEHLISTQLL YELSPCFKLG  300
FMAANLAILD SNDDEKEIHV IDFEIGEGGQ YVNLLHALST RRNGKAVKIT AVANNNDDGF  360
VVGDGGEERL NTVGDMLRKL GDRLGISVRF NVVTSLRLGD LSRESLGCDP DEPLAVNLAF  420
KLFRVPDESV CVENPRDELL RRVKGLKPRV VTLVEQEINS NTASFLSRVS ELCACYGALL  480
DSVESTVPST NSDRARVEEG IGRKVMNAVA CEGIDRIERC EVFGKWRMRM SMAGFELMPL  540
SEKIAESMKS RLDNGKRVHP GFTVKEDNGA VCFGWMGRTL AVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-3519758766473Protein SHORT-ROOT
5b3h_B4e-3519758712419Protein SHORT-ROOT
5b3h_E4e-3519758712419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401816.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A087GAF50.0A0A087GAF5_ARAAL; Uncharacterized protein
STRINGA0A087GAF50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8