PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26808.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 232aa    MW: 24557.5 Da    PI: 5.7068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26808.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.4e-1569118155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  ae+Aa+a++ a+++l+g
  KFK26808.1  69 SVFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVAEMAAAAYDVAALALKG 118
                 689***975..6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.13E-1669126No hitNo description
SuperFamilySSF541713.01E-1769126IPR016177DNA-binding domain
PfamPF008479.0E-969118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2570126IPR001471AP2/ERF domain
PROSITE profilePS5103219.50670126IPR001471AP2/ERF domain
SMARTSM003806.0E-2670132IPR001471AP2/ERF domain
PRINTSPR003677.9E-67182IPR001471AP2/ERF domain
PRINTSPR003677.9E-6108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSKTNPPTTG NQETTTFRVA SIALPSRPSD HQSPQSSPGS SSSPSLAAAA SGGGSPARRT  60
ATGLSGRHSV FRGIRLRNGK WVSEIREPRK TTRIWLGTYP VAEMAAAAYD VAALALKGSD  120
AVLNFPGLAL TYVPPASTSA ADIRAAAARA AEMKQPDPGG AERVLEPGQP GKEEEEALTS  180
TLEFMDEEAM LNIPTLLSEM AEGMLMSPPR MINPTHDDSP ENHQGDSLWS YK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1363126772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865890.11e-105ethylene-responsive transcription factor ERF025
SwissprotQ9FJ901e-101ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A087GAA61e-167A0A087GAA6_ARAAL; Uncharacterized protein
STRINGA0A087GAA61e-167(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-86ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]