PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26787.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 151aa    MW: 17194 Da    PI: 8.2113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26787.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-082381755
                HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 s ++ Lr+llP  +   ++K s ++ + +Av+YIk+Lq
  KFK26787.1  2 ASLYASLRSLLPLHF--IQGKRSTSDQVNEAVNYIKYLQ 38
                5789*********65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.19E-4142No hitNo description
PROSITE profilePS5088810.061137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-5238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-8353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-6751IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MASLYASLRS LLPLHFIQGK RSTSDQVNEA VNYIKYLQRK NKELSSRRDE LMLLSRGSFL  60
NDCKDDMKMM NNHVVVRQCL VGVEIVFSSR CCNGQPRLSS VLQVLSENAL CLVNSISSIV  120
DDRLIYTIHA EVSNMALVDL AELEERLIRM K
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174303e-81AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109523e-81BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
GenBankBT0116403e-81BT011640.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012558.14e-89transcription factor bHLH36
SwissprotQ9FLI12e-81BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A087GA851e-104A0A087GA85_ARAAL; Uncharacterized protein
STRINGA0A087GA851e-105(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.19e-84bHLH family protein