PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26541.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 462aa    MW: 51850.5 Da    PI: 7.3406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26541.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12315361455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  KFK26541.1 315 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 361
                 799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4047221IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17311377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.59E-14314365No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16315377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-10315361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MVLHKFWENQ DDRAMVESTL GSEACDFFIS SASSLTKLVS PPSDPNLQQG LRHVVEGSDW  60
DYALFWLASN LNGSDGCILI WADGHCRHKK PSSGDDQDDT KRRVLRKLHL SFVGPDEDRR  120
LLTKPGPLTD LDMFYLASIY FSFRCDSTKY GPAGTYVSGK PLWAADLPSC LSYYRVRSFL  180
ARSAGFQTVL SVPVNSGVVE LGSFKLIQED KSVIEMVKSV FGGSDFLHAK GAPKIFGRQL  240
SLGASKPRSM SINFSPKTED DSGFSLESYE VQAIGGSNQV YGYEQGKDET LYLTDEQKPR  300
KRGRKPANGR EEALNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL ADAITYITDM  360
QKKIRVYETE KQIMKRRESN QITPAEVDYQ QRHEDAVVRL SCPLETHPVS RVVHTLRENE  420
VTPHDSNVAV TEEGVVHTFT LRPQGGCTAE QLKDKLIASL SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-25309394283Transcription factor MYC2
5gnj_B2e-25309394283Transcription factor MYC2
5gnj_E2e-25309394283Transcription factor MYC2
5gnj_F2e-25309394283Transcription factor MYC2
5gnj_G2e-25309394283Transcription factor MYC2
5gnj_I2e-25309394283Transcription factor MYC2
5gnj_M2e-25309394283Transcription factor MYC2
5gnj_N2e-25309394283Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26541.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_193376.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A087G9I90.0A0A087G9I9_ARAAL; Uncharacterized protein
STRINGA0A087G9I90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]